Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 2.1e-158 562.4 295 100.0
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 1.5e-108 396.7 312 77.2
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 4.3e-71 272.3 301 63.5
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 1.0e-64 251.1 296 59.5
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 4.1e-45 186.0 325 46.2
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 7.2e-42 175.3 333 42.3
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 7.9e-41 171.8 317 42.6
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 6.7e-40 168.7 337 42.4
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 8.8e-40 168.3 326 44.5
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 3.3e-39 166.4 337 39.8
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 2.8e-38 163.3 324 43.5
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 6.3e-38 162.2 335 42.1
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 1.1e-37 161.4 326 44.5
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 2.0e-36 157.1 313 42.8
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 6.5e-35 152.1 316 43.0
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 8.5e-35 151.8 311 42.4
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 3.0e-32 143.3 333 37.8
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 6.7e-32 142.1 318 39.9
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 4.4e-31 139.4 302 36.8
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 5.7e-31 139.0 349 37.8
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 9.7e-31 138.3 315 34.9
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.3e-30 135.6 317 36.3
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 1.4e-29 134.4 299 38.8
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.8e-29 134.0 317 36.0
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 4.1e-29 132.9 313 38.0
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.6e-28 130.2 318 35.8
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 5.9e-28 129.0 304 37.8
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 2.9e-27 126.7 303 37.0
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 3.8e-27 126.3 324 35.8
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 8.5e-27 125.2 305 39.7
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 1.1e-26 124.8 315 36.5
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.2e-26 123.2 317 34.4
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.2e-26 123.2 326 37.1
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.2e-26 122.9 315 34.9
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 9.4e-26 121.7 311 40.8
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 9.4e-26 121.7 314 37.9
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 1.2e-25 121.3 315 34.6
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 3.6e-25 119.8 305 36.1
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.1e-25 119.0 328 35.7
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 6.1e-25 119.0 326 38.0
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 8.0e-25 118.6 302 40.1
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 8.0e-25 118.6 306 39.5
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 2.3e-24 117.1 321 37.1
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 3.9e-24 116.3 318 38.4
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 5.2e-24 115.9 242 36.0
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 3.3e-23 113.2 295 38.3
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 4.4e-23 112.8 319 37.6
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 4.4e-23 112.8 319 37.3
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 1.3e-22 111.3 300 35.7
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 1.3e-22 111.3 323 34.4
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 1.7e-22 110.9 318 34.3
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.7e-22 110.9 362 33.4
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.8e-22 110.2 319 34.5
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 3.7e-22 109.8 306 34.6
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 4.8e-22 109.4 245 35.1
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 8.2e-22 108.6 316 34.2
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 1.8e-21 107.5 299 35.5
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 2.4e-21 107.1 325 35.7
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.4e-21 107.1 347 32.0
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 2.4e-21 107.1 330 35.8
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 3.1e-21 106.7 329 37.4
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 9.1e-21 105.1 310 38.7
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 2.6e-20 103.6 307 38.4
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 3.5e-20 103.2 333 36.6
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 1.7e-19 100.9 320 34.1
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 2.9e-19 100.1 320 32.2
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 5.0e-19 99.4 296 36.8
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 8.5e-19 98.6 319 30.7
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 1.5e-18 97.8 340 30.6
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 1.9e-18 97.4 328 31.4
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 1.9e-18 97.4 325 32.6
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 2.5e-18 97.1 319 32.3
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 4.2e-18 96.3 251 35.5
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 4.2e-18 96.3 321 29.6
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 5.5e-18 95.9 335 31.0
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 5.5e-18 95.9 323 32.5
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 7.2e-18 95.5 329 31.9
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 9.4e-18 95.1 353 31.2
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 1.2e-17 94.7 355 31.8
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 1.6e-17 94.4 306 36.3
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 2.1e-17 94.0 301 35.5
TPR.G17916 Trifolium pratense HOM05D006343 ORTHO05D005694 6.1e-17 92.4 319 33.5
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 6.1e-17 92.4 302 34.8
Carub.0006s3693 Capsella rubella HOM05D012121 ORTHO05D005694 4.0e-16 89.7 330 32.4
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 6.8e-16 89.0 305 35.4
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 1.2e-15 88.2 299 33.4
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.0e-15 87.4 327 30.3
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 2.0e-15 87.4 333 27.0
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 4.4e-15 86.3 299 37.1
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 4.4e-15 86.3 231 32.0
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 4.4e-15 86.3 188 37.2
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 1.3e-14 84.7 337 30.6
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 1.7e-14 84.3 343 29.4
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 1.7e-14 84.3 303 36.0
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 1.7e-14 84.3 320 35.3
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 1.7e-14 84.3 295 30.5
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 2.2e-14 84.0 335 31.0
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 2.2e-14 84.0 374 28.3
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 2.8e-14 83.6 318 31.4
arahy.Tifrunner.gnm1.ann1.C4511I Arachis hypogaea HOM05D051984 ORTHO05D005694 1.4e-13 81.3 97 52.6
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.8e-13 80.9 302 34.1
Medtr8g028835 Medicago truncatula HOM05D006343 ORTHO05D005694 2.4e-13 80.5 76 61.8
ECA233G1044 Erigeron canadensis HOM05D006343 ORTHO05D005694 3.1e-13 80.1 349 30.4
arahy.Tifrunner.gnm1.ann1.ZG4E8S Arachis hypogaea HOM05D051984 ORTHO05D005694 4.1e-13 79.7 115 47.0
FAN01G2602 Fragaria x ananassa HOM05D006343 ORTHO05D005694 9.1e-13 78.6 203 35.5
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 1.2e-12 78.2 342 28.7
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 5.0e-11 72.8 345 30.7
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 5.0e-11 72.8 345 30.7
Aqoxy7G00256 Aquilegia oxysepala HOM05D006343 ORTHO05D005694 6.5e-11 72.4 341 30.2
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 6.5e-11 72.4 246 29.3
CDE02G1832 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 2.5e-10 70.5 219 30.6
Sc01g0003550 Simmondsia chinensis HOM05D006343 ORTHO05D005694 3.2e-10 70.1 298 31.5
C09p00270 Brassica napus HOM05D012121 ORTHO05D005694 9.4e-10 68.6 347 30.0
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.2e-09 68.2 306 35.6
FAN06G3127 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.6e-09 66.6 201 31.3
Oeu035728.1 Olea europaea HOM05D006343 ORTHO05D005694 4.7e-09 66.2 307 26.7
Migut.D00457 Erythranthe guttata HOM05D006343 ORTHO05D005694 6.1e-09 65.9 190 37.4
FAN10G3360 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.1e-09 65.9 201 30.3
FvH4_7g14880 Fragaria vesca HOM05D006343 ORTHO05D005694 1.4e-08 64.7 202 31.2
FAN10G1634 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.2e-08 62.8 201 29.9
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.5e-07 61.2 303 27.1
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 2.0e-07 60.8 172 32.6
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 3.4e-07 60.1 103 43.7
Actinidia10044 Actinidia chinensis HOM05D006343 ORTHO05D005694 1.3e-06 58.2 147 35.4
PSO782G1271 Papaver somniferum HOM05D020029 ORTHO05D005694 3.7e-06 56.6 203 29.6
EL10Ac1g00388 Beta vulgaris HOM05D029301 ORTHO05D005694 4.8e-06 56.2 302 30.1
Ca_23604_v3 Cicer arietinum L. HOM05D006343 ORTHO05D005694 6.3e-06 55.8 108 50.0


User provided reference genes

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