Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 2.4e-23 111.3 55 100.0
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 7.6e-22 106.3 54 96.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.3e-18 95.5 54 90.7
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 8.7e-18 92.8 54 85.2
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 1.1e-17 92.4 54 87.0
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.5e-17 91.3 54 85.2
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.5e-17 91.3 54 85.2
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.3e-17 90.9 54 85.2
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 3.3e-17 90.9 54 85.2
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 5.7e-17 90.1 54 85.2
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 5.7e-17 90.1 54 85.2
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 5.7e-17 90.1 54 85.2
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.7e-17 90.1 54 85.2
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.7e-17 90.1 54 85.2
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 5.7e-17 90.1 54 83.3
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.7e-17 90.1 54 83.3
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 5.7e-17 90.1 54 83.3
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 7.4e-17 89.7 54 81.5
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 7.4e-17 89.7 54 83.3
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 1.3e-16 89.0 54 83.3
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.3e-16 89.0 54 83.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.3e-16 89.0 54 85.2
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.1e-16 88.2 54 81.5
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 2.1e-16 88.2 54 83.3
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 2.1e-16 88.2 54 83.3
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.1e-16 88.2 54 81.5
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 2.1e-16 88.2 54 79.6
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 2.1e-16 88.2 54 83.3
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 2.8e-16 87.8 54 79.6
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 2.8e-16 87.8 54 77.8
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 2.8e-16 87.8 54 77.8
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 2.8e-16 87.8 54 79.6
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 3.7e-16 87.4 54 83.3
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 3.7e-16 87.4 54 81.5
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 3.7e-16 87.4 54 81.5
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 3.7e-16 87.4 54 75.9
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 3.7e-16 87.4 54 79.6
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 3.7e-16 87.4 54 81.5
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 4.8e-16 87.0 54 81.5
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 4.8e-16 87.0 54 79.6
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 4.8e-16 87.0 54 81.5
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 4.8e-16 87.0 54 79.6
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.8e-16 87.0 54 81.5
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 6.2e-16 86.7 54 83.3
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 6.2e-16 86.7 54 81.5
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 6.2e-16 86.7 54 79.6
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 8.2e-16 86.3 54 81.5
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 8.2e-16 86.3 54 79.6
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 8.2e-16 86.3 54 81.5
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 8.2e-16 86.3 54 79.6
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 8.2e-16 86.3 54 77.8
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 8.2e-16 86.3 54 79.6
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 8.2e-16 86.3 54 79.6
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.1e-15 85.9 54 79.6
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.1e-15 85.9 54 79.6
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.4e-15 85.5 54 79.6
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.4e-15 85.5 54 79.6
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.4e-15 85.5 54 79.6
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.4e-15 85.5 51 82.4
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.8e-15 85.1 55 80.0
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.8e-15 85.1 51 84.3
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.8e-15 85.1 54 79.6
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.8e-15 85.1 54 77.8
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.4e-15 84.7 54 79.6
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 2.4e-15 84.7 54 77.8
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.4e-15 84.7 54 79.6
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 2.4e-15 84.7 54 79.6
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 2.4e-15 84.7 54 81.5
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 2.4e-15 84.7 54 79.6
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 2.4e-15 84.7 54 79.6
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.4e-15 84.7 54 75.9
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 3.1e-15 84.3 54 77.8
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 3.1e-15 84.3 54 79.6
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 5.3e-15 83.6 54 77.8
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 5.3e-15 83.6 54 77.8
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 5.3e-15 83.6 54 79.6
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 5.3e-15 83.6 54 77.8
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 5.3e-15 83.6 51 82.4
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 6.9e-15 83.2 54 83.3
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 6.9e-15 83.2 53 77.4
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 6.9e-15 83.2 54 77.8
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 6.9e-15 83.2 51 80.4
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 6.9e-15 83.2 54 79.6
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 9.0e-15 82.8 49 85.7
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 9.0e-15 82.8 51 82.4
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.2e-14 82.4 54 75.9
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.2e-14 82.4 54 75.9
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.2e-14 82.4 50 84.0
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.2e-14 82.4 54 74.1
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.5e-14 82.0 54 75.9
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 2.0e-14 81.6 53 75.5
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.0e-14 81.6 53 75.5
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.0e-14 81.6 54 79.6
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.6e-14 81.3 51 78.4
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.6e-14 81.3 54 75.9
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.6e-14 81.3 54 75.9
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.6e-14 81.3 54 75.9
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.6e-14 81.3 53 77.4
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.4e-14 80.9 54 74.1
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.4e-14 80.9 53 75.5
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 5.8e-14 80.1 54 72.2
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 5.8e-14 80.1 54 72.2
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 7.6e-14 79.7 54 74.1
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.0e-13 79.3 54 72.2
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 1.3e-13 79.0 54 75.9
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.7e-13 78.6 54 72.2
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.7e-13 78.6 53 75.5
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.7e-13 78.6 53 75.5
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.7e-13 78.6 53 75.5
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.7e-13 78.6 53 75.5
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.7e-13 78.6 53 75.5
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.7e-13 78.6 54 70.4
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.2e-13 78.2 48 83.3
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 2.2e-13 78.2 54 72.2
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 2.2e-13 78.2 54 72.2
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 2.9e-13 77.8 54 72.2
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 3.8e-13 77.4 53 73.6
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 3.8e-13 77.4 53 73.6
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 3.8e-13 77.4 54 70.4
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 3.8e-13 77.4 53 73.6
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 3.8e-13 77.4 53 73.6
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 6.5e-13 76.6 51 74.5
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.1e-12 75.9 51 72.5
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.4e-12 75.5 42 90.5
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 2.5e-12 74.7 53 71.7
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 2.5e-12 74.7 53 71.7
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 7.1e-12 73.2 53 71.7
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.2e-11 72.4 52 67.3
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.2e-11 72.4 52 67.3
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 1.6e-11 72.0 40 92.5
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 4.6e-11 70.5 51 64.7
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.0e-10 67.8 52 61.5
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 3.3e-09 64.3 46 65.2
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 5.7e-09 63.5 43 67.4
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 1.8e-07 58.5 46 58.7
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 3.1e-07 57.8 41 68.3
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 1.2e-06 55.8 43 69.8
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.0e-05 52.8 29 82.8


User provided reference genes

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