Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G052566 Glycine max HOM05D004242 ORTHO05D004349 4.7e-118 427.9 224 100.0
Glyma.16G021500 Glycine max HOM05D004242 ORTHO05D004349 3.6e-86 322.0 227 77.1
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 9.5e-63 244.2 257 58.8
VMungo0331G0961 Vigna mungo HOM05D004242 ORTHO05D004349 2.4e-53 213.0 208 61.1
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 7.8e-49 198.0 240 52.9
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 1.3e-43 180.6 237 48.5
VMungo0331G0491 Vigna mungo HOM05D004242 ORTHO05D004349 2.1e-38 163.3 228 48.7
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 5.1e-24 115.5 311 30.9
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 2.6e-20 103.2 242 33.9
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 3.8e-19 99.4 294 28.9
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 5.0e-19 99.0 339 30.4
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 8.5e-19 98.2 328 29.9
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 1.9e-18 97.1 268 34.0
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.1e-17 92.0 230 33.9
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 1.3e-16 90.9 253 33.2
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.3e-16 90.9 230 33.5
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.1e-16 89.0 188 34.6
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 8.7e-16 88.2 188 34.6
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.5e-15 86.7 347 25.1
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 3.3e-15 86.3 188 34.0
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.3e-15 85.9 228 32.9
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 7.4e-15 85.1 175 33.1
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 1.6e-14 84.0 229 31.9
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.2e-14 83.6 152 36.2
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 4.8e-14 82.4 215 31.2
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 4.8e-14 82.4 145 36.6
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 8.2e-14 81.6 345 25.8
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.4e-13 80.9 271 28.8
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 2.4e-13 80.1 244 29.9
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 3.1e-13 79.7 369 26.6
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 3.1e-13 79.7 210 31.4
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 5.3e-13 79.0 210 29.5
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 5.3e-13 79.0 147 35.4
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 6.9e-13 78.6 260 28.1
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 2.0e-12 77.0 126 34.9
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 2.6e-12 76.6 269 29.0
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 5.9e-12 75.5 309 27.8
Glyma.16G021450 Glycine max HOM05D004242 ORTHO05D004349 1.0e-11 74.7 104 48.1
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.0e-11 74.7 219 29.2
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 1.3e-11 74.3 198 28.3
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 2.2e-11 73.6 365 25.5
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 3.8e-11 72.8 277 28.2
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 8.5e-11 71.6 266 26.3
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 1.4e-10 70.9 227 26.9
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 1.4e-10 70.9 247 28.7
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 1.4e-10 70.9 289 29.8
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.4e-10 70.9 96 43.8
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 1.9e-10 70.5 272 26.8
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 2.5e-10 70.1 202 28.7
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 2.5e-10 70.1 209 30.6
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 3.2e-10 69.7 193 30.6
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 5.5e-10 68.9 211 29.9
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 5.5e-10 68.9 275 26.2
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 7.2e-10 68.6 260 26.2
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.2e-10 68.6 268 25.7
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.2e-10 68.6 260 26.2
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.2e-10 68.6 260 26.2
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 7.2e-10 68.6 190 30.0
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 1.2e-09 67.8 259 29.0
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 1.2e-09 67.8 148 31.1
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 2.1e-09 67.0 270 27.0
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 2.7e-09 66.6 260 27.7
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.7e-09 66.6 279 26.2
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.6e-09 66.2 269 25.7
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 3.6e-09 66.2 119 36.1
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 4.6e-09 65.9 141 34.0
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 4.6e-09 65.9 236 28.0
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 4.6e-09 65.9 188 30.3
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 6.1e-09 65.5 201 28.4
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 7.9e-09 65.1 182 29.1
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.0e-08 64.7 137 32.8
VMungo0331G1172 Vigna mungo HOM05D004242 ORTHO05D004349 1.8e-08 63.9 83 48.2
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 1.8e-08 63.9 222 29.3
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 2.3e-08 63.5 98 42.9
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 2.3e-08 63.5 251 29.9
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 3.0e-08 63.2 260 28.1
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 3.0e-08 63.2 186 27.4
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 3.9e-08 62.8 181 29.8
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 5.1e-08 62.4 260 27.7
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 6.7e-08 62.0 140 34.3
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 6.7e-08 62.0 259 27.8
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 6.7e-08 62.0 259 27.8
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 6.7e-08 62.0 264 26.1
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.7e-08 62.0 264 26.1
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 6.7e-08 62.0 129 34.9
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 6.7e-08 62.0 272 26.5
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 8.8e-08 61.6 202 28.7
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.8e-08 61.6 291 25.8
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 1.1e-07 61.2 202 28.7
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 1.1e-07 61.2 259 27.4
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 1.1e-07 61.2 202 30.2
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 1.1e-07 61.2 291 27.5
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.5e-07 60.8 298 24.8
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.5e-07 60.8 70 38.6
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.5e-07 60.8 128 35.2
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.0e-07 60.5 265 27.5
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.0e-07 60.5 265 27.5
ECA240G3602 Erigeron canadensis HOM05D004242 ORTHO05D004349 2.0e-07 60.5 232 28.4
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.0e-07 60.5 174 28.7
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 2.0e-07 60.5 225 27.6
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 2.6e-07 60.1 260 25.4
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 2.6e-07 60.1 233 26.2
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 3.3e-07 59.7 225 25.3
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 4.4e-07 59.3 200 26.0
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 4.4e-07 59.3 290 24.8
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 4.4e-07 59.3 260 28.8
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.7e-07 58.9 44 56.8
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 7.4e-07 58.5 176 30.7
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 7.4e-07 58.5 272 24.6
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 9.7e-07 58.2 108 36.1
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 9.7e-07 58.2 255 29.4
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 9.7e-07 58.2 82 40.2
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 9.7e-07 58.2 223 25.6
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 9.7e-07 58.2 243 29.6
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 1.3e-06 57.8 121 35.5
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.3e-06 57.8 154 31.8
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.3e-06 57.8 184 27.7
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 1.7e-06 57.4 258 27.1
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 1.7e-06 57.4 98 35.7
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 2.8e-06 56.6 139 31.7
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 2.8e-06 56.6 194 29.4
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.8e-06 56.6 174 28.7
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 2.8e-06 56.6 223 24.7
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 2.8e-06 56.6 170 25.9
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 3.7e-06 56.2 141 31.2
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 3.7e-06 56.2 139 31.7
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 3.7e-06 56.2 139 31.7
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 3.7e-06 56.2 136 33.1
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 3.7e-06 56.2 77 33.8
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 3.7e-06 56.2 110 33.6
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 4.8e-06 55.8 77 32.5
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 6.3e-06 55.5 139 30.9
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 6.3e-06 55.5 69 43.5
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 6.3e-06 55.5 91 34.1
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 6.3e-06 55.5 70 35.7
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 8.2e-06 55.1 258 29.5
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 8.2e-06 55.1 94 39.4


User provided reference genes

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