Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 0.0e+00 1107.4 543 100.0
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 6.1e-289 996.9 546 89.6
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 3.6e-281 971.1 543 87.1
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 2.1e-265 918.7 550 81.1
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 1.6e-260 902.5 543 81.2
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 2.0e-255 885.6 545 79.6
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 1.7e-254 882.5 544 79.2
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 1.1e-253 879.8 543 79.6
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 4.0e-232 808.1 540 72.6
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 5.8e-231 804.3 540 72.6
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 8.2e-201 704.1 543 64.8
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 2.4e-200 702.6 543 63.9
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 2.2e-198 696.0 551 63.3
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 3.8e-198 695.3 544 63.6
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 5.0e-198 694.9 544 63.6
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.2e-196 690.3 538 64.3
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 1.6e-196 689.9 543 63.5
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.6e-196 689.9 540 62.4
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 3.0e-195 685.6 544 62.1
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 3.9e-195 685.3 544 61.9
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 6.9e-192 674.5 544 61.0
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 2.0e-191 672.9 543 61.9
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 2.9e-190 669.1 540 62.8
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 5.0e-190 668.3 545 62.2
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 1.1e-189 667.2 543 62.2
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 2.1e-188 662.9 542 61.8
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 6.1e-188 661.4 548 61.9
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 8.8e-187 657.5 539 60.9
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 8.2e-185 651.0 537 58.8
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 4.5e-183 645.2 540 60.0
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 5.9e-183 644.8 542 59.0
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.7e-182 643.3 540 59.3
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 2.9e-182 642.5 563 58.1
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 6.5e-182 641.3 537 58.8
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 1.6e-180 636.7 546 58.6
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 2.1e-180 636.3 540 59.1
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 3.9e-179 632.1 638 54.7
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 8.8e-179 630.9 541 59.1
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 5.7e-178 628.2 546 58.8
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 7.4e-178 627.9 541 56.9
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.8e-177 625.9 541 58.8
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 4.8e-177 625.2 539 56.4
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 8.2e-177 624.4 540 56.9
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.2e-175 620.5 539 56.8
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 1.2e-175 620.5 540 56.7
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 2.6e-175 619.4 540 55.9
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 4.5e-175 618.6 540 57.6
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 7.7e-175 617.8 538 58.7
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.3e-174 617.1 502 61.2
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 6.5e-174 614.8 541 56.6
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 8.5e-174 614.4 543 55.8
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 1.1e-173 614.0 539 55.5
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 2.7e-172 609.4 541 55.5
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 3.6e-172 609.0 540 55.6
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 1.0e-171 607.4 548 56.4
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 1.4e-171 607.1 537 55.9
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 5.2e-171 605.1 537 55.7
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 8.8e-171 604.4 539 55.5
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 7.4e-170 601.3 541 57.1
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 1.7e-169 600.1 540 56.5
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 3.1e-168 595.9 540 55.2
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 7.0e-168 594.7 761 44.0
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 1.0e-166 590.9 540 57.2
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 1.0e-166 590.9 583 53.9
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 8.5e-166 587.8 539 55.5
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 9.4e-165 584.3 492 59.1
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 4.7e-164 582.0 544 56.8
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 8.0e-164 581.3 546 54.8
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.2e-162 577.4 541 56.2
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 2.6e-162 576.2 543 54.9
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 5.7e-162 575.1 484 61.4
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 2.8e-161 572.8 538 54.8
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 2.8e-161 572.8 541 55.6
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 1.7e-158 563.5 538 54.1
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 2.2e-158 563.1 539 54.9
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 5.2e-155 552.0 538 52.6
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 2.7e-151 539.7 476 61.1
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 1.6e-148 530.4 298 84.9
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 2.1e-148 530.0 488 55.7
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 8.0e-148 528.1 542 53.1
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.3e-147 526.6 538 52.6
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 9.8e-146 521.2 528 51.5
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 8.3e-145 518.1 540 51.3
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 4.1e-144 515.8 479 56.6
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 3.3e-141 506.1 493 54.4
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 2.8e-140 503.1 366 65.8
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 5.2e-139 498.8 477 55.6
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 5.8e-138 495.4 549 49.9
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 3.2e-136 489.6 539 49.0
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.0e-126 458.0 445 53.5
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 3.5e-119 433.0 540 45.2
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 8.1e-116 421.8 544 43.4
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 2.9e-113 413.3 538 41.4
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 6.9e-107 392.1 543 41.8
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.7e-105 387.5 356 54.2
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 2.3e-102 377.1 265 67.9
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 5.3e-99 365.9 256 67.6
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 2.3e-86 323.9 273 60.8
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 3.0e-86 323.6 541 35.3
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.1e-83 315.1 268 59.0
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 1.1e-80 305.1 506 38.5
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 3.0e-78 297.0 203 67.5
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.6e-76 291.2 257 57.6
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 4.8e-76 289.7 281 52.3
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.5e-74 284.6 315 50.2
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 1.5e-74 284.6 444 39.6
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 6.7e-70 269.2 185 67.6
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.9e-64 251.1 270 52.6
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 1.8e-62 244.6 269 48.0
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 7.7e-50 202.6 201 53.7
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 8.5e-41 172.6 435 31.5
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 2.7e-39 167.5 128 66.4
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 3.6e-39 167.2 292 38.0
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.5e-32 144.4 124 58.1
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.4e-27 127.9 112 57.1
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 4.9e-20 103.6 481 25.8
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 2.7e-18 97.8 335 25.4
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 8.1e-15 86.3 141 39.7
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 5.2e-14 83.6 91 50.5
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 5.2e-14 83.6 91 50.5
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 5.2e-14 83.6 91 50.5
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 3.4e-13 80.9 336 22.0
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 5.4e-11 73.6 338 23.4
Lsat_1_v5_gn_0_9700 Lactuca sativa HOM05D008167 ORTHO05D010296 4.6e-10 70.5 406 23.4
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 3.9e-09 67.4 343 20.4
TPR.G32489 Trifolium pratense HOM05D008167 ORTHO05D010296 3.9e-09 67.4 305 24.9
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 5.1e-09 67.0 388 21.1
CiPaw.05G235800 Carya illinoinensis HOM05D008167 ORTHO05D010296 1.9e-08 65.1 368 22.0
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 3.3e-08 64.3 326 20.2
TWI56G0729 Tripterygium wilfordii HOM05D008167 ORTHO05D010296 3.3e-08 64.3 405 21.7
Dinv13035 Davidia involucrata HOM05D008167 ORTHO05D010296 4.3e-08 63.9 386 19.9
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 4.3e-08 63.9 111 39.6
Nn1g05299 Nelumbo nucifera HOM05D008167 ORTHO05D010296 4.3e-08 63.9 378 21.2
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 7.3e-08 63.2 109 36.7
Thecc.08G110600 Theobroma cacao HOM05D008167 ORTHO05D010296 7.3e-08 63.2 340 21.8
QL12p036142 Quercus lobata HOM05D008167 ORTHO05D010296 9.5e-08 62.8 335 20.9
Ciclev10001481m.g Citrus clementina HOM05D008167 ORTHO05D010296 1.2e-07 62.4 323 21.7
Actinidia10306 Actinidia chinensis HOM05D008167 ORTHO05D010296 1.6e-07 62.0 339 21.8
Lj4C719T5 Lonicera japonica HOM05D008167 ORTHO05D010296 1.6e-07 62.0 342 21.6
PSO133G0102 Papaver somniferum HOM05D008167 ORTHO05D010296 2.1e-07 61.6 389 20.6
Lj4C716T9 Lonicera japonica HOM05D008167 ORTHO05D010296 3.6e-07 60.8 336 21.7
Potri.002G093800 Populus trichocarpa HOM05D008167 ORTHO05D010296 6.2e-07 60.1 332 20.8
PSO541G2703 Papaver somniferum HOM05D008167 ORTHO05D010296 8.1e-07 59.7 391 20.7
Gorai.002G219300 Gossypium raimondii HOM05D008167 ORTHO05D010296 1.1e-06 59.3 338 20.4
Lalb_Chr01g0013571 Lupinus albus HOM05D008167 ORTHO05D010296 1.1e-06 59.3 338 23.7
DCAR_008714 Daucus carota HOM05D008167 ORTHO05D010296 1.4e-06 58.9 279 20.1
HanXRQChr04g0111501 Helianthus annuus HOM05D008167 ORTHO05D010296 1.8e-06 58.5 358 21.8
arahy.Tifrunner.gnm1.ann1.R32LA5 Arachis hypogaea HOM05D008167 ORTHO05D010296 2.3e-06 58.2 360 21.4
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 6.8e-06 56.6 38 63.2
Lj3g0012000 Lotus japonicus HOM05D008167 ORTHO05D010296 6.8e-06 56.6 312 24.4
COL.COLO4_16444 Corchorus olitorius HOM05D008167 ORTHO05D010296 8.9e-06 56.2 337 20.8


User provided reference genes

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