Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1817.4 1019 100.0
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1504.2 1020 84.4
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1493.8 1028 83.0
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1473.0 1022 82.2
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1329.7 1043 75.7
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1308.5 1032 73.7
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1303.5 1009 74.3
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1301.6 978 76.2
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1299.6 1031 72.9
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1289.2 1034 71.5
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1284.6 1040 74.4
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 0.0e+00 1275.8 1058 72.0
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1219.9 1040 70.2
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1182.5 1055 64.5
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1173.7 1061 65.4
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1171.4 866 76.6
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1158.7 1034 64.7
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1157.9 1034 64.7
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1151.7 1068 64.2
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1139.8 1032 65.0
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1137.9 1032 63.0
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1134.0 1041 63.1
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1132.5 1043 64.0
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1131.7 1026 62.3
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1128.6 1062 62.2
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 0.0e+00 1125.5 1014 66.7
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1119.8 1064 63.3
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1109.0 1065 61.5
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1105.9 1033 63.3
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1104.4 1038 65.4
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1099.7 1035 64.6
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1098.2 1033 63.3
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1096.3 1038 66.5
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1091.3 1023 64.5
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1090.5 1086 60.9
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 0.0e+00 1086.6 1037 66.5
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1077.0 1053 61.0
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 0.0e+00 1077.0 1053 63.8
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 0.0e+00 1075.8 1062 60.9
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 0.0e+00 1075.8 1027 61.7
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 7.0e-312 1073.9 1053 60.9
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 3.5e-311 1071.6 1060 62.6
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 2.0e-309 1065.8 1041 62.7
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.3e-308 1063.1 1040 62.1
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 4.2e-307 1058.1 1198 56.3
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 9.3e-307 1057.0 1020 61.9
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 7.9e-306 1053.9 1020 60.4
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 7.9e-306 1053.9 996 64.5
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 1.1e-304 1050.0 1076 58.7
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 2.5e-304 1048.9 1030 59.3
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 1.6e-303 1046.2 1003 62.9
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.4e-302 1043.1 1025 59.4
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 6.9e-302 1040.8 1093 57.4
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 2.6e-301 1038.9 1028 62.3
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 5.8e-301 1037.7 1052 59.2
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 7.6e-301 1037.3 1021 58.5
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.9e-299 1032.7 1017 60.1
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.3e-297 1026.5 1038 64.2
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 2.3e-297 1025.8 1034 58.6
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 5.1e-297 1024.6 1083 59.5
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 5.7e-296 1021.1 948 62.4
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.3e-295 1020.0 976 63.1
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.6e-295 1019.6 1087 56.9
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.4e-294 1016.5 1028 59.2
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.5e-293 1013.1 1039 57.1
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 4.5e-293 1011.5 1063 60.3
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.9e-292 1008.8 905 61.9
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 3.2e-291 1005.4 1044 58.1
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 4.2e-291 1005.0 951 61.4
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 3.6e-290 1001.9 1018 61.7
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.4e-289 1000.0 1028 56.1
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.3e-287 993.4 1036 57.2
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 2.2e-287 992.6 1054 57.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 1.1e-286 990.3 1030 56.7
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.0e-284 983.8 1038 60.9
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.9e-284 982.2 1047 55.1
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.8e-281 973.0 912 64.5
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.3e-279 966.8 1027 58.7
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 2.8e-279 965.7 924 63.0
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 6.3e-279 964.5 1036 58.2
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.8e-278 963.0 909 62.4
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 1.5e-277 959.9 1037 57.9
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 1.8e-273 946.4 858 62.7
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 2.3e-273 946.0 1045 57.1
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 3.0e-273 945.7 1056 59.3
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 7.7e-269 931.0 933 61.5
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 2.2e-268 929.5 1027 54.9
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 8.5e-268 927.5 1032 55.5
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.2e-264 917.1 1029 53.9
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 7.2e-259 897.9 1059 52.6
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 2.4e-254 882.9 896 61.4
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.1e-254 882.5 854 60.7
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 9.5e-251 870.9 889 57.8
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.0e-249 867.5 1071 53.1
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.7e-247 860.1 1023 53.9
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 5.6e-243 845.1 1055 50.0
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.7e-237 826.2 828 58.1
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 4.7e-234 815.5 1080 48.0
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.3e-231 807.4 1068 48.3
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.2e-224 784.3 713 64.0
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 5.2e-217 758.8 586 69.8
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 7.6e-216 755.0 616 67.0
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 3.0e-212 743.0 1007 48.9
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.7e-205 719.9 611 66.0
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 2.8e-194 683.3 1029 44.6
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 9.0e-185 651.7 963 43.6
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.3e-178 631.3 1169 39.8
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.2e-176 624.8 912 43.8
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 5.0e-175 619.4 559 63.3
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 4.5e-168 596.3 498 67.1
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 6.5e-167 592.4 730 55.3
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.8e-164 584.3 894 45.5
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 4.2e-158 563.1 912 41.4
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 4.4e-155 553.1 601 56.1
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 6.3e-154 549.3 643 51.3
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 8.3e-138 495.7 939 37.7
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 2.2e-122 444.5 364 68.1
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 6.4e-98 363.2 1066 30.2
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.2e-96 359.0 358 56.4
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.4e-89 335.5 630 39.5
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.5e-86 325.5 312 58.7
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 5.1e-79 300.4 746 36.3
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 9.0e-68 263.1 734 30.5
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.7e-66 258.8 591 36.5
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 1.0e-63 249.6 211 70.6
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.4e-60 239.2 200 67.0
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 5.1e-55 220.7 251 56.6
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 8.2e-53 213.4 227 58.1
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.1e-52 211.5 175 66.9
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 4.7e-40 171.0 151 66.9
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 9.4e-33 146.7 159 56.6
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 4.7e-32 144.4 228 52.2
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.8e-31 142.5 115 72.2
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.6e-27 129.4 132 56.8
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 7.7e-27 127.1 215 47.0
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.4e-20 106.3 222 40.5
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 2.0e-19 102.4 58 82.8
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.9e-17 95.9 79 57.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 2.5e-17 95.5 51 88.2
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.6e-16 92.8 80 60.0
Sc16g0005110 Simmondsia chinensis HOM05D060119 ORTHO05D019833 3.6e-08 65.1 60 56.7
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 2.3e-07 62.4 45 62.2
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 2.3e-07 62.4 45 62.2
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 6.8e-07 60.8 150 32.7
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 8.9e-07 60.5 45 60.0
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 8.9e-07 60.5 45 60.0
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 2.0e-06 59.3 45 57.8
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 9.8e-06 57.0 50 66.0


User provided reference genes

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