Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 4.7e-166 587.8 298 100.0
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 7.5e-156 553.9 298 94.0
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.7e-136 489.6 299 84.9
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.1e-133 480.3 298 81.2
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.5e-132 476.5 298 80.9
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 1.3e-131 473.4 298 80.2
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.7e-131 473.0 299 81.6
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.1e-130 470.3 269 91.4
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.0e-128 463.8 269 89.6
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.9e-127 459.5 299 79.3
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 5.1e-120 434.9 301 76.1
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.0e-104 382.5 302 68.5
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 2.8e-102 375.9 299 66.2
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 3.6e-102 375.6 301 68.1
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 6.2e-102 374.8 335 63.3
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 6.9e-101 371.3 301 66.8
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 2.6e-100 369.4 302 67.2
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 5.8e-100 368.2 302 66.9
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 2.2e-99 366.3 303 65.0
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.9e-99 365.9 308 66.9
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 2.4e-98 362.8 331 62.5
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 6.0e-97 358.2 270 68.9
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 1.3e-96 357.1 334 61.7
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 5.1e-96 355.1 336 61.6
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 5.1e-96 355.1 304 64.5
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 9.6e-95 350.9 328 61.3
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.6e-95 350.9 303 63.7
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.7e-94 349.0 318 62.9
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.8e-94 348.6 338 60.1
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.4e-93 346.3 303 63.0
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.4e-93 346.3 303 63.0
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 4.0e-93 345.5 332 59.0
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.2e-92 344.0 225 80.0
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-92 343.6 225 79.6
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.5e-92 343.6 225 79.6
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 1.7e-91 340.1 310 60.0
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.7e-91 340.1 321 58.3
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.2e-91 339.7 321 58.3
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 3.8e-91 339.0 225 77.3
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.5e-91 338.2 325 58.8
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 6.5e-91 338.2 225 77.8
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 8.4e-91 337.8 302 62.6
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.1e-90 337.4 233 75.5
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 1.1e-90 337.4 325 58.8
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.4e-90 337.0 212 82.5
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 7.1e-90 334.7 225 77.8
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.6e-89 333.6 225 76.4
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.6e-89 333.6 225 76.4
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 2.1e-89 333.2 275 66.5
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.1e-89 333.2 252 69.4
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.5e-89 332.4 285 63.2
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 3.5e-89 332.4 276 66.3
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 4.6e-89 332.0 242 70.7
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 6.0e-89 331.6 229 75.1
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 7.9e-89 331.3 231 76.2
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 7.9e-89 331.3 225 76.4
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 7.9e-89 331.3 227 76.2
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 2.3e-88 329.7 223 77.1
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 3.0e-88 329.3 236 71.6
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 5.1e-88 328.6 220 77.7
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 8.7e-88 327.8 225 74.7
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 8.7e-88 327.8 225 74.7
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.1e-87 327.4 337 55.5
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.5e-87 327.0 279 63.1
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 2.5e-87 326.2 232 73.3
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 3.3e-87 325.9 226 75.2
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.3e-87 325.9 225 74.7
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 4.3e-87 325.5 220 74.5
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 7.4e-87 324.7 289 61.9
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.6e-86 323.6 315 58.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.6e-86 323.6 226 76.1
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.8e-86 322.8 247 70.0
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 3.7e-86 322.4 226 76.1
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 3.7e-86 322.4 229 72.9
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 6.3e-86 321.6 222 74.8
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.1e-85 320.9 222 74.3
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.1e-85 320.9 211 77.3
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.1e-85 320.9 231 72.3
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.4e-85 320.5 239 69.0
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.4e-85 320.5 247 69.6
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.8e-85 320.1 226 75.2
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 1.8e-85 320.1 229 72.1
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.4e-85 319.7 222 73.9
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 2.4e-85 319.7 225 71.1
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 2.4e-85 319.7 253 66.8
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.4e-85 319.7 231 71.0
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 4.1e-85 318.9 225 74.2
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 4.1e-85 318.9 228 74.1
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 4.1e-85 318.9 228 74.1
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 6.9e-85 318.2 260 66.5
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 6.9e-85 318.2 226 73.0
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 6.9e-85 318.2 226 73.0
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 6.9e-85 318.2 222 73.0
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.2e-84 317.4 226 73.5
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.5e-84 317.0 226 73.5
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 3.4e-84 315.8 220 75.9
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 4.5e-84 315.5 217 76.5
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 4.5e-84 315.5 225 74.2
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 5.9e-84 315.1 226 73.0
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 5.9e-84 315.1 235 70.2
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 7.6e-84 314.7 231 70.1
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.0e-83 314.3 235 69.8
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 1.3e-83 313.9 227 72.7
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 2.9e-83 312.8 223 74.9
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.8e-83 312.4 233 70.4
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.1e-82 310.8 222 72.5
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 2.5e-82 309.7 232 69.4
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 3.2e-82 309.3 222 69.8
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 3.2e-82 309.3 222 70.3
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 5.5e-82 308.5 178 88.8
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 5.5e-82 308.5 218 73.9
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 1.2e-81 307.4 229 69.4
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.3e-80 303.9 221 69.7
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 3.9e-80 302.4 233 66.1
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 6.7e-80 301.6 294 57.8
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 5.7e-79 298.5 218 71.1
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.3e-78 297.4 221 69.7
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 2.8e-78 296.2 223 71.3
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 2.8e-78 296.2 245 64.1
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 6.3e-78 295.0 223 71.3
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 6.3e-78 295.0 213 71.4
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 9.0e-77 291.2 216 68.1
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 1.4e-74 283.9 226 66.4
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 2.1e-73 280.0 177 81.4
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.1e-66 257.7 170 75.9
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.5e-66 255.4 191 72.8
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 6.1e-65 251.9 255 55.3
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.3e-63 246.1 167 73.7
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 9.7e-63 244.6 183 70.5
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 9.7e-63 244.6 205 67.3
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 2.4e-61 240.0 225 56.4
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 2.4e-61 240.0 225 56.4
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 5.3e-61 238.8 279 53.0
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 5.3e-61 238.8 340 44.7
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 3.5e-60 236.1 241 57.3
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.0e-59 232.3 174 73.0
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 8.5e-59 231.5 222 58.1
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.1e-58 231.1 191 69.1
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 7.2e-58 228.4 219 56.2
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.6e-57 227.3 189 62.4
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.7e-56 221.9 167 70.1
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.0e-51 208.0 227 50.2
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 2.2e-51 206.8 185 59.5
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 4.7e-49 199.1 185 55.1
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 5.2e-48 195.7 157 67.5
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.1e-45 188.0 235 48.1
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 4.7e-41 172.6 204 48.5
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 5.4e-29 132.5 342 33.3
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 4.6e-28 129.4 256 34.8
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.2e-23 114.8 68 79.4
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 5.4e-21 105.9 198 34.3
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 3.3e-18 96.7 207 31.9
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 3.1e-16 90.1 236 30.9
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.1e-12 77.4 244 27.9
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 6.6e-11 72.4 59 57.6
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.5e-10 71.2 55 70.9
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 9.5e-10 68.6 55 65.5
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 8.1e-09 65.5 202 30.2
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.8e-08 64.3 42 64.3
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.9e-08 62.0 41 73.2
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 1.3e-06 58.2 72 41.7
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 1.3e-06 58.2 72 41.7
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 1.3e-06 58.2 72 41.7
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 3.8e-06 56.6 58 46.6
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 3.8e-06 56.6 58 46.6


User provided reference genes

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