Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.2e-152 543.1 280 100.0
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 6.2e-128 461.1 261 93.1
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 6.4e-117 424.5 263 83.3
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 1.4e-116 423.3 262 82.4
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 3.4e-110 402.1 262 79.4
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 5.1e-106 388.3 240 81.2
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.6e-104 383.3 264 74.2
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.8e-104 382.5 263 75.7
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 3.1e-103 379.0 262 74.8
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.2e-102 377.1 262 74.4
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.2e-102 377.1 279 71.3
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.5e-102 376.7 263 74.9
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.5e-102 376.7 262 74.8
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.0e-101 374.0 258 74.4
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 2.9e-101 372.5 225 79.6
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 9.3e-100 367.5 256 73.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.1e-99 366.3 248 78.2
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.7e-99 365.9 220 80.5
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 4.6e-99 365.2 258 75.2
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 7.9e-99 364.4 250 76.0
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 7.9e-99 364.4 216 80.1
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 7.9e-99 364.4 235 76.2
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.3e-98 363.6 252 74.2
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.3e-98 363.6 286 68.2
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 8.7e-98 360.9 256 74.6
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 8.7e-98 360.9 262 73.7
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 2.5e-97 359.4 217 82.0
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 4.3e-97 358.6 219 80.8
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 7.4e-97 357.8 265 69.8
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.3e-96 357.1 259 70.7
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 4.8e-96 355.1 265 69.4
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.8e-96 355.1 219 78.5
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.4e-95 353.6 274 65.3
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.4e-95 353.6 213 79.8
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.4e-95 353.6 217 79.3
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 5.3e-95 351.7 249 71.9
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.5e-94 350.1 212 84.9
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.5e-94 350.1 213 83.6
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.5e-94 350.1 269 68.0
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 2.0e-94 349.7 211 80.6
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 4.5e-94 348.6 217 79.3
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 4.5e-94 348.6 216 77.3
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.0e-93 347.4 227 76.2
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.3e-93 347.1 221 75.6
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.3e-93 347.1 266 68.8
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.5e-92 342.8 231 71.0
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 3.2e-92 342.4 218 76.6
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 3.2e-92 342.4 256 71.1
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 7.2e-92 341.3 226 74.3
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 9.4e-92 340.9 215 78.6
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.6e-91 340.1 228 73.7
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 4.6e-91 338.6 213 76.5
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 7.9e-91 337.8 227 74.9
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 7.9e-91 337.8 213 75.6
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.4e-90 337.0 219 75.3
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.8e-90 336.7 242 70.2
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 5.1e-90 335.1 255 67.5
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 5.1e-90 335.1 255 67.5
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 5.1e-90 335.1 214 76.2
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 5.1e-90 335.1 214 76.2
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.7e-90 334.7 261 67.0
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 8.8e-90 334.3 231 72.3
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-89 334.0 257 66.9
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.1e-89 334.0 255 67.5
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.1e-89 334.0 257 66.9
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.5e-89 333.6 214 75.2
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.5e-89 333.6 216 75.0
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 4.3e-89 332.0 233 73.0
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 5.7e-89 331.6 216 75.0
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 5.7e-89 331.6 220 75.5
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 7.4e-89 331.3 264 64.0
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 7.4e-89 331.3 229 71.6
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 9.7e-89 330.9 216 75.0
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 9.7e-89 330.9 216 75.0
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.3e-88 330.5 254 65.7
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.3e-88 330.5 242 69.0
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.7e-88 330.1 219 73.5
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.7e-88 330.1 210 75.7
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-88 329.7 216 74.5
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 2.8e-88 329.3 215 74.9
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 4.8e-88 328.6 215 76.7
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.3e-88 328.2 242 68.6
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.1e-87 327.4 216 76.4
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.1e-87 327.4 251 70.5
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.1e-87 327.4 242 71.5
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.4e-87 326.2 268 64.6
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 4.1e-87 325.5 226 73.0
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 5.3e-87 325.1 215 75.3
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 5.9e-86 321.6 258 65.5
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 2.9e-85 319.3 216 73.6
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 2.9e-85 319.3 235 69.4
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.9e-85 319.3 218 71.1
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 3.8e-85 318.9 211 73.5
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.4e-84 317.0 263 66.5
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.9e-84 316.6 213 75.1
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 2.5e-84 316.2 216 73.6
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 2.5e-84 316.2 216 73.6
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 4.2e-84 315.5 213 74.6
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 5.5e-84 315.1 217 72.8
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 5.5e-84 315.1 234 69.2
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.2e-83 313.9 217 72.4
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.2e-83 313.9 219 72.6
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.2e-83 313.9 213 72.8
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.6e-83 312.4 211 76.8
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 4.7e-83 312.0 219 71.2
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 6.1e-83 311.6 216 72.2
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 7.9e-83 311.2 216 70.8
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.0e-82 310.8 216 70.8
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 1.4e-82 310.5 214 71.5
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.3e-82 309.7 215 71.6
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 3.0e-82 309.3 213 73.7
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.0e-82 309.3 211 76.3
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 3.0e-82 309.3 219 72.1
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 5.1e-82 308.5 209 70.3
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.1e-82 308.5 217 71.4
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.1e-82 308.5 226 70.4
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 5.1e-82 308.5 262 62.2
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 5.1e-82 308.5 182 80.8
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.5e-81 307.0 229 69.4
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.7e-81 305.1 211 72.5
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 5.7e-81 305.1 213 71.4
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 7.4e-81 304.7 245 65.3
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 7.4e-81 304.7 213 71.4
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.3e-80 303.9 213 69.0
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.7e-80 303.5 219 68.5
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 2.2e-80 303.1 241 65.1
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 4.8e-80 302.0 213 69.5
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.8e-80 302.0 246 65.0
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.4e-79 300.4 211 75.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 3.1e-79 299.3 213 70.9
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 7.0e-79 298.1 216 67.6
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.6e-78 296.2 216 66.7
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.6e-78 296.2 216 66.7
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 5.9e-78 295.0 216 66.2
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 5.9e-78 295.0 216 66.2
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 5.9e-78 295.0 216 66.2
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 6.1e-75 285.0 207 68.6
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.4e-74 283.9 216 66.2
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 3.9e-74 282.3 202 70.8
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 4.8e-72 275.4 176 77.8
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.8e-71 273.5 173 75.1
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.0e-69 265.4 325 51.4
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 8.0e-67 258.1 247 58.3
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.1e-63 247.7 216 64.8
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.8e-63 246.9 243 54.7
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.4e-63 246.5 216 59.3
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.1e-63 246.1 235 56.2
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 7.7e-62 241.5 134 89.6
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 2.2e-61 240.0 134 88.8
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.3e-56 224.2 201 57.7
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 2.2e-56 223.4 133 82.0
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 8.3e-56 221.5 239 55.2
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-55 221.1 218 54.1
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 5.9e-46 188.7 225 44.4
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.6e-38 164.1 193 50.8
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.6e-38 164.1 168 48.2
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.8e-34 150.6 140 55.0
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.6e-29 132.1 80 78.8
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 1.6e-27 127.5 110 60.9
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 4.2e-15 86.3 75 58.7
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 4.8e-11 72.8 66 56.1
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 2.4e-10 70.5 89 40.4
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 4.0e-10 69.7 69 50.7
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.5e-09 67.8 81 49.4
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.2e-08 63.9 40 75.0
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 4.2e-07 59.7 69 50.7
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 9.3e-07 58.5 42 69.0


User provided reference genes

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