Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G025532 Glycine max HOM05D005915 ORTHO05D007239 4.8e-50 201.1 98 100.0
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 2.4e-41 172.2 96 88.5
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 4.0e-33 144.8 99 71.7
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 2.9e-31 138.7 100 70.0
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 1.1e-27 126.7 95 63.2
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 2.6e-24 115.5 96 58.3
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 2.6e-24 115.5 97 58.8
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 7.6e-24 114.0 97 56.7
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 2.2e-23 112.5 97 59.8
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 1.0e-20 103.6 99 54.5
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 5.1e-20 101.3 89 62.9
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 1.1e-19 100.1 99 52.5
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 3.3e-19 98.6 99 59.6
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 9.7e-19 97.1 99 58.6
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.0e-15 87.0 63 65.1
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 1.0e-15 87.0 89 49.4
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.7e-15 86.3 82 56.1
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 1.9e-14 82.8 59 64.4
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 2.5e-14 82.4 59 64.4
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 3.2e-14 82.0 48 72.9
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 3.2e-14 82.0 62 59.7
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 3.2e-14 82.0 62 59.7
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 3.2e-14 82.0 74 54.1
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 4.2e-14 81.6 48 70.8
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 9.4e-14 80.5 48 70.8
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 3.6e-13 78.6 75 53.3
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 4.6e-13 78.2 77 53.2
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 6.1e-13 77.8 98 43.9
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 6.1e-13 77.8 97 47.4
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 6.1e-13 77.8 48 64.6
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 1.0e-12 77.0 71 50.7
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 1.0e-12 77.0 97 44.3
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 1.4e-12 76.6 60 56.7
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 2.3e-12 75.9 97 46.4
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 2.3e-12 75.9 97 46.4
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 3.0e-12 75.5 102 44.1
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 3.0e-12 75.5 78 48.7
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 3.0e-12 75.5 72 50.0
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 3.9e-12 75.1 81 46.9
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 3.9e-12 75.1 76 48.7
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 5.1e-12 74.7 48 62.5
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 5.1e-12 74.7 99 41.4
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 5.1e-12 74.7 45 66.7
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 5.1e-12 74.7 83 44.6
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 6.7e-12 74.3 74 51.4
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 6.7e-12 74.3 98 42.9
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 8.8e-12 73.9 88 42.0
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 8.8e-12 73.9 47 63.8
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 8.8e-12 73.9 77 49.4
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 1.5e-11 73.2 79 48.1
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 1.5e-11 73.2 48 62.5
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 2.0e-11 72.8 94 39.4
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 3.3e-11 72.0 45 64.4
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 3.3e-11 72.0 98 41.8
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 5.7e-11 71.2 96 38.5
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 5.7e-11 71.2 48 58.3
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 7.4e-11 70.9 93 43.0
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 7.4e-11 70.9 60 56.7
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 7.4e-11 70.9 79 43.0
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 7.4e-11 70.9 44 63.6
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 9.7e-11 70.5 99 41.4
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 9.7e-11 70.5 48 60.4
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 9.7e-11 70.5 63 54.0
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 1.3e-10 70.1 95 40.0
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 1.3e-10 70.1 47 59.6
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 1.3e-10 70.1 47 61.7
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 1.7e-10 69.7 48 58.3
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 1.7e-10 69.7 99 41.4
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 1.7e-10 69.7 76 43.4
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 1.7e-10 69.7 119 39.5
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 2.2e-10 69.3 48 58.3
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 2.2e-10 69.3 48 58.3
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 2.2e-10 69.3 48 58.3
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 2.2e-10 69.3 48 58.3
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 2.8e-10 68.9 60 50.0
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 2.8e-10 68.9 45 62.2
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 2.8e-10 68.9 49 61.2
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 3.7e-10 68.6 60 48.3
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 3.7e-10 68.6 36 80.6
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 4.8e-10 68.2 44 63.6
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 4.8e-10 68.2 111 37.8
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 6.3e-10 67.8 48 56.2
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 6.3e-10 67.8 100 39.0
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 6.3e-10 67.8 48 64.6
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 8.2e-10 67.4 101 37.6
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 8.2e-10 67.4 36 77.8
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 8.2e-10 67.4 83 43.4
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 1.8e-09 66.2 79 44.3
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 1.8e-09 66.2 99 39.4
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 1.8e-09 66.2 44 61.4
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 1.8e-09 66.2 41 65.9
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 3.1e-09 65.5 90 43.3
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 4.1e-09 65.1 44 59.1
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 5.3e-09 64.7 105 40.0
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 5.3e-09 64.7 36 75.0
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 9.1e-09 63.9 106 42.5
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 1.2e-08 63.5 95 36.8
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 7.7e-08 60.8 36 69.4
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 1.3e-07 60.1 57 43.9
Pp3c9_20610 Physcomitrium patens HOM05D005915 ORTHO05D007239 1.7e-07 59.7 41 61.0
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 3.8e-07 58.5 80 45.0
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 5.0e-07 58.2 31 74.2
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 6.5e-07 57.8 53 47.2
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 1.1e-06 57.0 37 67.6
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 1.4e-06 56.6 80 40.0


User provided reference genes

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