Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.7e-135 486.1 259 100.0
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 5.9e-133 477.6 259 98.1
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.3e-124 449.1 259 93.8
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 8.0e-122 440.7 259 91.9
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 2.7e-117 425.6 260 88.8
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 5.0e-116 421.4 260 87.3
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 4.3e-115 418.3 263 86.7
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 9.5e-115 417.2 263 86.7
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.2e-114 416.8 263 86.3
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 4.7e-114 414.8 263 85.6
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.3e-113 412.5 263 85.6
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.2e-112 410.2 263 84.4
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.0e-112 409.5 263 84.4
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.0e-112 409.5 263 84.4
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.0e-112 409.5 263 84.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.6e-112 409.1 263 84.0
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 4.4e-112 408.3 263 85.2
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 4.4e-112 408.3 263 84.4
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.3e-111 406.8 263 84.0
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.9e-111 404.8 263 83.7
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.9e-111 404.8 263 83.7
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.1e-110 403.7 245 88.6
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.1e-110 403.7 263 84.0
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.4e-110 403.3 263 83.3
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.4e-110 403.3 263 83.7
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.4e-110 403.3 263 83.3
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.4e-110 402.5 263 83.7
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.4e-110 402.5 263 82.9
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 82.1
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.2e-110 402.1 263 83.3
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.4e-110 401.4 263 83.7
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 9.2e-110 400.6 263 82.5
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 9.2e-110 400.6 263 82.9
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 9.2e-110 400.6 263 82.5
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.2e-109 400.2 263 82.9
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 1.2e-109 400.2 263 82.9
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.5e-109 398.7 263 83.3
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 4.6e-109 398.3 263 81.0
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 4.6e-109 398.3 263 83.3
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 6.0e-109 397.9 263 82.5
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 82.1
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 6.0e-109 397.9 263 82.1
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 7.8e-109 397.5 263 82.9
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 7.8e-109 397.5 263 82.9
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 7.8e-109 397.5 263 81.4
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 7.8e-109 397.5 263 83.3
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.7e-108 396.4 263 82.5
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.7e-108 396.4 263 83.3
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.3e-108 396.0 255 84.7
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 2.3e-108 396.0 263 80.6
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.3e-108 396.0 263 80.6
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.3e-108 396.0 263 80.2
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 82.1
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.0e-108 395.6 263 80.6
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 3.0e-108 395.6 263 82.9
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 3.9e-108 395.2 263 80.2
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 3.9e-108 395.2 263 82.1
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 80.5
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 6.6e-108 394.4 263 82.1
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.6e-108 394.0 263 80.2
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 8.6e-108 394.0 262 82.1
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-107 393.7 263 80.6
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.1e-107 393.7 263 82.5
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.9e-107 392.9 263 79.5
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.9e-107 392.9 263 81.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.5e-107 392.5 263 79.5
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.3e-107 392.1 264 81.4
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 4.3e-107 391.7 263 81.0
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 7.3e-107 391.0 263 80.6
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 9.5e-107 390.6 263 80.2
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 9.5e-107 390.6 259 80.3
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.2e-106 390.2 262 79.8
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.6e-106 389.8 263 79.5
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.1e-106 389.4 263 79.5
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.1e-106 389.4 263 80.6
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.8e-106 389.0 262 78.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.8e-106 389.0 263 80.2
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 4.7e-106 388.3 262 79.0
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.7e-106 388.3 264 81.4
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 6.2e-106 387.9 264 78.8
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 8.1e-106 387.5 263 79.8
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.1e-105 387.1 260 79.6
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.1e-105 387.1 263 79.8
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.4e-105 386.7 263 79.5
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.8e-105 386.3 263 80.2
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 1.8e-105 386.3 263 80.6
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.8e-105 386.3 262 80.5
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.8e-105 386.3 262 80.5
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.3e-105 386.0 263 79.5
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 4.0e-105 385.2 262 79.4
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 4.0e-105 385.2 262 79.8
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 5.2e-105 384.8 263 80.6
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 6.8e-105 384.4 263 78.7
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 79.0
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 2.6e-104 382.5 263 79.8
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 4.4e-104 381.7 263 76.8
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 5.8e-104 381.3 263 79.1
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 3.7e-103 378.6 262 77.1
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 3.7e-103 378.6 263 77.6
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.4e-102 376.7 251 80.5
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.9e-102 376.3 263 76.8
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 2.4e-102 375.9 264 78.4
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 4.1e-102 375.2 247 83.4
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.6e-101 373.2 259 79.2
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.6e-101 373.2 247 82.6
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 3.0e-100 369.0 239 85.8
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.9e-99 366.3 260 76.5
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 4.3e-99 365.2 220 88.2
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 5.6e-99 364.8 270 75.6
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.1e-98 362.8 259 76.4
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 4.7e-98 361.7 263 74.9
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 8.1e-98 360.9 263 74.5
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 8.1e-98 360.9 263 74.5
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 8.1e-98 360.9 263 74.5
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 8.1e-98 360.9 263 74.5
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 8.1e-98 360.9 263 74.5
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 8.1e-98 360.9 263 74.5
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 8.1e-98 360.9 263 74.5
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.1e-97 360.5 263 74.5
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.4e-97 360.1 263 74.1
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.4e-97 360.1 270 73.7
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.8e-97 359.8 218 86.2
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 2.4e-97 359.4 263 74.1
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 2.4e-97 359.4 263 74.1
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 3.1e-97 359.0 264 73.9
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 3.1e-97 359.0 263 74.1
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 3.1e-97 359.0 264 73.9
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 3.1e-97 359.0 263 74.1
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 3.1e-97 359.0 264 73.9
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 3.1e-97 359.0 263 74.5
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 6.8e-97 357.8 263 73.8
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 8.9e-97 357.5 263 74.1
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.2e-96 357.1 263 74.1
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 9.2e-94 347.4 210 86.2
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.7e-92 343.2 222 77.9
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.5e-91 340.1 222 77.5
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 7.3e-91 337.8 259 67.6
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.1e-89 334.0 221 79.2
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.4e-89 333.6 249 72.3
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.0e-89 332.0 261 68.2
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.0e-89 332.0 215 84.2
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.7e-87 326.6 263 70.7
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.1e-86 323.9 263 69.6
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.1e-85 319.7 220 73.6
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 8.7e-84 314.3 201 85.1
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.5e-80 303.5 223 70.0
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.1e-78 297.4 225 64.9
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 3.2e-78 295.8 263 66.9
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 4.2e-78 295.4 267 62.2
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.1e-70 270.8 208 67.3
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 7.1e-70 268.1 251 61.8
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.2e-69 267.3 251 63.7
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.5e-67 259.6 248 63.3
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 4.3e-67 258.8 269 55.8
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 2.8e-66 256.1 264 58.3
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 6.9e-65 251.5 211 64.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.5e-61 239.2 266 59.0
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.7e-55 220.3 241 51.5
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 5.1e-52 208.8 131 82.4
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.5e-51 207.2 237 57.0
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.3e-51 205.7 240 47.9
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.5e-48 197.2 118 86.4
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 2.3e-44 183.3 138 72.5
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.1e-43 181.0 180 59.4
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.4e-36 157.5 118 75.4
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.2e-32 144.4 142 61.3
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.4e-28 131.0 192 45.3
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.8e-25 120.6 69 91.3
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.5e-24 116.3 96 66.7


User provided reference genes

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