Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 3.1e-69 265.0 134 100.0
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 5.0e-27 124.8 143 55.9
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 6.4e-22 107.8 131 51.1
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.5e-18 96.7 94 58.5
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 2.5e-18 95.9 126 54.0
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 4.3e-18 95.1 59 78.0
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 4.3e-18 95.1 59 78.0
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 7.3e-18 94.4 90 58.9
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 9.5e-18 94.0 58 86.2
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 9.5e-18 94.0 58 86.2
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 9.5e-18 94.0 58 86.2
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.2e-17 93.6 58 82.8
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.6e-17 93.2 59 78.0
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.6e-17 93.2 59 78.0
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.6e-17 93.2 59 76.3
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.6e-17 93.2 90 61.1
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 2.1e-17 92.8 152 44.7
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 2.8e-17 92.4 58 84.5
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 2.8e-17 92.4 59 74.6
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 3.6e-17 92.0 59 76.3
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 3.6e-17 92.0 58 81.0
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 4.7e-17 91.7 59 76.3
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 4.7e-17 91.7 58 77.6
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 4.7e-17 91.7 58 77.6
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 4.7e-17 91.7 95 55.8
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 6.2e-17 91.3 59 76.3
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 6.2e-17 91.3 113 52.2
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 8.1e-17 90.9 59 78.0
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 8.1e-17 90.9 58 82.8
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 1.1e-16 90.5 58 82.8
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 1.4e-16 90.1 53 84.9
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.4e-16 90.1 59 74.6
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.8e-16 89.7 58 81.0
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 3.1e-16 89.0 58 81.0
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 3.1e-16 89.0 58 81.0
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 3.1e-16 89.0 58 79.3
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 4.0e-16 88.6 58 77.6
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 5.2e-16 88.2 59 72.9
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 5.2e-16 88.2 58 74.1
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 5.2e-16 88.2 59 72.9
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 5.2e-16 88.2 57 82.5
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 6.8e-16 87.8 59 74.6
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 6.8e-16 87.8 57 73.7
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 8.9e-16 87.4 116 47.4
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 8.9e-16 87.4 59 74.6
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 1.2e-15 87.0 59 74.6
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.2e-15 87.0 58 79.3
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.2e-15 87.0 58 79.3
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.2e-15 87.0 58 75.9
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 1.5e-15 86.7 59 72.9
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 1.5e-15 86.7 59 74.6
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 2.0e-15 86.3 57 80.7
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 2.0e-15 86.3 58 72.4
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.0e-15 86.3 59 71.2
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 2.0e-15 86.3 57 80.7
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 2.6e-15 85.9 59 72.9
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 2.6e-15 85.9 59 74.6
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 2.6e-15 85.9 59 71.2
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 3.4e-15 85.5 59 69.5
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 3.4e-15 85.5 59 69.5
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 3.4e-15 85.5 59 69.5
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 3.4e-15 85.5 59 69.5
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 4.4e-15 85.1 59 69.5
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 4.4e-15 85.1 59 69.5
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 4.4e-15 85.1 59 69.5
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 4.4e-15 85.1 58 81.0
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 4.4e-15 85.1 59 69.5
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 4.4e-15 85.1 59 71.2
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 5.8e-15 84.7 59 67.8
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 5.8e-15 84.7 141 43.3
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 5.8e-15 84.7 52 78.8
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 9.9e-15 84.0 58 70.7
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 9.9e-15 84.0 59 72.9
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 9.9e-15 84.0 60 71.7
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.3e-14 83.6 60 75.0
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.3e-14 83.6 60 70.0
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 1.7e-14 83.2 59 69.5
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.7e-14 83.2 59 69.5
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 2.9e-14 82.4 54 74.1
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 3.7e-14 82.0 122 44.3
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 3.7e-14 82.0 58 72.4
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 4.9e-14 81.6 58 65.5
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 4.9e-14 81.6 59 69.5
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 4.9e-14 81.6 59 69.5
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 6.4e-14 81.3 58 70.7
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 8.4e-14 80.9 58 69.0
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 1.4e-13 80.1 58 70.7
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 3.2e-13 79.0 94 44.7
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 4.1e-13 78.6 53 69.8
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 5.4e-13 78.2 90 56.7
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 1.7e-11 73.2 50 70.0
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 5.1e-11 71.6 54 55.6
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 2.5e-10 69.3 90 43.3
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 7.3e-10 67.8 47 70.2
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 1.2e-09 67.0 52 57.7
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 2.8e-09 65.9 39 84.6
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 4.0e-08 62.0 39 71.8
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 5.8e-07 58.2 41 70.7
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 1.3e-06 57.0 56 50.0
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 3.8e-06 55.5 42 61.9


User provided reference genes

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