Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 3.9e-38 161.0 82 100.0
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 1.9e-32 142.1 76 93.4
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.2e-31 139.4 84 85.7
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.1e-29 132.9 87 80.5
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 8.1e-28 126.7 82 73.2
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.1e-27 126.3 82 78.0
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 5.3e-27 124.0 82 73.2
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 3.4e-26 121.3 83 75.9
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.3e-25 119.4 84 71.4
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 2.2e-25 118.6 85 65.9
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 6.4e-25 117.1 82 72.0
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 8.4e-25 116.7 84 70.2
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 1.1e-24 116.3 82 67.1
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.9e-24 115.5 85 65.9
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 1.9e-24 115.5 80 71.2
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 2.4e-24 115.2 79 72.2
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 4.2e-24 114.4 92 64.1
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 5.4e-24 114.0 77 68.8
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 5.4e-24 114.0 67 80.6
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 9.3e-24 113.2 84 64.3
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 9.3e-24 113.2 92 60.9
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 9.3e-24 113.2 75 68.0
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 9.3e-24 113.2 75 68.0
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 9.3e-24 113.2 67 79.1
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.2e-23 112.8 73 74.0
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.6e-23 112.5 81 66.7
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 2.1e-23 112.1 77 67.5
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 2.7e-23 111.7 74 68.9
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 6.0e-23 110.5 68 76.5
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 6.0e-23 110.5 94 58.5
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 1.0e-22 109.8 74 67.6
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 1.8e-22 109.0 69 71.0
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.8e-22 109.0 79 64.6
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 2.3e-22 108.6 77 66.2
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.3e-22 108.6 82 59.8
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 3.0e-22 108.2 89 60.7
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 3.0e-22 108.2 69 72.5
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 3.9e-22 107.8 89 60.7
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 8.7e-22 106.7 69 73.9
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.1e-21 106.3 77 62.3
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 1.1e-21 106.3 84 64.3
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 1.1e-21 106.3 83 62.7
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 1.5e-21 105.9 71 70.4
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 1.9e-21 105.5 67 73.1
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.5e-21 105.1 80 63.8
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 3.3e-21 104.8 85 58.8
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 5.6e-21 104.0 77 61.0
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 5.6e-21 104.0 80 62.5
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 7.4e-21 103.6 75 61.3
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 9.6e-21 103.2 61 75.4
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 1.6e-20 102.4 58 77.6
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.6e-20 102.4 80 62.5
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 1.6e-20 102.4 82 59.8
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 2.1e-20 102.1 75 61.3
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 2.8e-20 101.7 82 54.9
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.8e-20 101.7 69 65.2
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.1e-19 99.8 81 59.3
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 2.4e-19 98.6 80 62.5
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 4.0e-19 97.8 81 59.3
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 4.0e-19 97.8 81 59.3
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 6.9e-19 97.1 69 65.2
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 6.9e-19 97.1 73 61.6
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 9.0e-19 96.7 70 60.0
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 9.0e-19 96.7 70 62.9
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 1.2e-18 96.3 76 63.2
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.0e-18 95.5 75 61.3
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 2.0e-18 95.5 97 53.6
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 1.3e-17 92.8 84 54.8
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.9e-17 91.7 87 56.3
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 2.9e-17 91.7 92 51.1
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 4.9e-17 90.9 80 53.8
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 6.5e-17 90.5 80 56.2
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.1e-16 89.7 80 58.8
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 1.9e-16 89.0 90 54.4
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 5.5e-16 87.4 78 52.6
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 7.1e-16 87.0 79 55.7
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.1e-15 85.5 79 55.7
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 4.6e-15 84.3 62 56.5
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 7.9e-15 83.6 76 53.9
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.3e-14 82.8 76 53.9
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 2.3e-14 82.0 116 41.4
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.5e-13 79.3 67 52.2
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.9e-13 79.0 82 46.3
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 3.3e-13 78.2 74 50.0
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 4.3e-13 77.8 62 54.8
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 4.3e-13 77.8 62 54.8
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 5.7e-13 77.4 63 54.0
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 7.4e-13 77.0 85 50.6
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 3.7e-12 74.7 61 54.1
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 3.7e-12 74.7 61 54.1
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 3.7e-12 74.7 74 50.0
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 6.2e-12 73.9 62 50.0
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.1e-11 73.2 87 42.5
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 1.8e-11 72.4 71 50.7
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.8e-11 72.4 81 44.4
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 4.0e-11 71.2 87 41.4
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 4.0e-11 71.2 63 49.2
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 6.9e-11 70.5 46 67.4
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.5e-10 69.3 87 40.2
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 1.5e-10 69.3 55 50.9
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.5e-10 69.3 55 56.4
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 2.6e-10 68.6 46 56.5
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 3.4e-10 68.2 48 58.3
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.0e-09 66.6 88 37.5
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 1.0e-09 66.6 81 43.2
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 1.0e-09 66.6 57 54.4
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.3e-09 66.2 62 48.4
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 1.3e-09 66.2 57 52.6
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 2.9e-09 65.1 54 50.0
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 3.8e-09 64.7 80 43.8
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 3.8e-09 64.7 61 52.5
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 5.0e-09 64.3 82 41.5
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 5.0e-09 64.3 82 41.5
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 5.0e-09 64.3 82 41.5
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 6.5e-09 63.9 53 52.8
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 6.5e-09 63.9 171 29.8
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 8.4e-09 63.5 52 55.8
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 1.4e-08 62.8 42 54.8
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 3.2e-08 61.6 42 59.5
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-08 61.6 55 47.3
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 4.2e-08 61.2 55 52.7
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 5.5e-08 60.8 57 45.6
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 1.2e-07 59.7 39 61.5
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 2.1e-07 58.9 54 48.1
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 3.5e-07 58.2 61 42.6
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 3.5e-07 58.2 44 50.0
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 3.5e-07 58.2 65 46.2
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.0e-06 56.6 54 48.1
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 3.9e-06 54.7 105 36.2


User provided reference genes

Program Settings