Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 2.5e-167 592.0 298 100.0
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 3.1e-154 548.5 299 93.6
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 3.0e-144 515.4 298 87.2
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 1.1e-143 513.5 298 87.9
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 2.8e-142 508.8 298 86.9
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.4e-138 496.5 298 84.2
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 1.6e-134 483.0 306 80.1
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 2.1e-134 482.6 306 79.7
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 5.2e-133 478.0 301 80.1
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 6.8e-133 477.6 296 79.7
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 8.3e-131 470.7 274 83.6
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 4.6e-129 464.9 299 79.6
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 6.2e-126 454.5 301 74.4
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.1e-125 453.8 285 78.2
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 1.4e-125 453.4 272 78.7
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 1.8e-125 453.0 284 77.1
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 1.8e-125 453.0 278 77.7
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.8e-125 453.0 286 78.0
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.8e-125 453.0 276 78.3
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.1e-125 452.2 276 78.6
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 4.0e-125 451.8 301 74.8
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 6.8e-125 451.1 311 72.0
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 6.8e-125 451.1 281 77.9
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 8.9e-125 450.7 295 75.3
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.2e-124 450.3 272 78.7
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.2e-124 450.3 272 78.7
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.2e-124 450.3 276 78.3
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.5e-124 449.9 291 74.6
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 1.5e-124 449.9 307 73.6
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 5.8e-124 448.0 273 78.8
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 5.8e-124 448.0 275 78.9
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 5.8e-124 448.0 293 74.7
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 7.6e-124 447.6 255 82.0
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 7.6e-124 447.6 276 77.5
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 9.9e-124 447.2 297 73.1
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 9.9e-124 447.2 297 76.1
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.7e-123 446.4 281 77.2
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.7e-123 446.4 267 79.8
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.7e-123 446.4 303 72.9
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.2e-123 446.0 297 75.8
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 3.7e-123 445.3 300 72.7
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 4.9e-123 444.9 283 77.0
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 6.4e-123 444.5 307 71.3
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.1e-122 443.7 306 73.2
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.1e-122 443.7 263 80.2
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 1.1e-122 443.7 277 77.3
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.4e-122 443.4 300 73.3
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 1.9e-122 443.0 277 77.3
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 2.4e-122 442.6 276 77.2
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 2.4e-122 442.6 277 77.3
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 3.2e-122 442.2 306 72.9
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 3.2e-122 442.2 291 75.3
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.2e-122 442.2 296 75.3
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 4.1e-122 441.8 306 72.9
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 5.4e-122 441.4 308 72.4
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.6e-121 439.9 306 72.5
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.6e-121 439.9 300 74.0
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.1e-121 439.5 270 74.8
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 2.1e-121 439.5 268 78.4
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 2.7e-121 439.1 292 75.7
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 2.7e-121 439.1 298 72.5
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 2.7e-121 439.1 262 80.2
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 3.5e-121 438.7 301 72.8
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 3.5e-121 438.7 301 72.8
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.0e-120 437.2 278 76.6
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.3e-120 436.8 305 70.8
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 1.3e-120 436.8 306 72.5
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 1.7e-120 436.4 314 70.7
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.7e-120 436.4 275 76.7
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 6.6e-120 434.5 298 72.5
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.1e-119 433.7 289 74.0
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.1e-119 433.7 301 71.4
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 1.5e-119 433.3 297 73.1
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.5e-119 432.6 274 75.5
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 3.3e-119 432.2 281 75.1
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 3.3e-119 432.2 305 72.5
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 9.6e-119 430.6 267 76.4
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 1.6e-118 429.9 263 77.9
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.6e-118 429.9 255 79.2
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 2.8e-118 429.1 266 76.7
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.4e-117 426.8 263 75.3
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 1.4e-117 426.8 293 71.7
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 1.8e-117 426.4 274 75.9
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.0e-117 425.2 276 75.4
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 5.2e-117 424.9 298 70.1
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 6.8e-117 424.5 254 78.7
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.2e-116 423.7 251 80.1
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 1.4e-114 416.8 243 80.7
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 7.1e-114 414.5 318 65.1
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 2.7e-113 412.5 243 79.0
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 2.7e-113 412.5 243 79.0
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.0e-112 410.6 243 78.2
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 3.3e-111 405.6 295 69.5
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 1.3e-110 403.7 252 75.0
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 6.4e-107 391.3 289 68.5
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 9.6e-103 377.5 219 82.2
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 9.0e-101 370.9 283 64.0
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.7e-99 366.7 294 65.0
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 9.3e-98 360.9 259 65.3
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 8.7e-96 354.4 281 66.2
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.6e-94 350.1 273 61.2
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.1e-93 347.4 272 68.8
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.8e-93 346.7 285 58.9
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 5.3e-93 345.1 273 61.2
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 9.3e-90 334.3 199 81.9
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 3.9e-88 328.9 273 59.0
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 1.1e-87 327.4 192 80.2
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 1.1e-85 320.9 192 78.1
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 2.4e-85 319.7 192 77.6
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.2e-84 317.4 190 79.5
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.9e-82 310.1 229 65.5
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 5.5e-82 308.5 263 57.4
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.1e-81 306.6 177 80.2
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 2.7e-81 306.2 187 78.1
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 3.6e-81 305.8 190 75.3
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 5.3e-77 292.0 256 56.6
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 5.5e-74 282.0 243 55.6
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 4.3e-71 272.3 210 66.2
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.1e-65 253.4 256 50.8
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 5.3e-61 238.8 177 68.9
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 8.8e-56 221.5 255 49.8
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 2.6e-55 219.9 192 62.0
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 2.3e-40 170.2 134 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.1e-34 151.4 274 35.0
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 7.3e-34 148.7 85 82.4
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.1e-25 120.6 316 29.1
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 3.7e-22 109.8 288 34.0
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 8.3e-22 108.6 65 75.4
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 2.3e-19 100.5 64 70.3
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 6.2e-17 92.4 105 54.3
MCO15G348 Micromonas commoda HOM05D006171 ORTHO05D268671 3.4e-15 86.7 262 32.4
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 3.9e-11 73.2 98 50.0


User provided reference genes

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