Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 7.7e-211 736.9 370 100.0
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 2.9e-173 612.1 328 95.7
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 3.0e-162 575.5 337 88.4
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 8.7e-162 573.9 333 89.8
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.0e-146 523.9 345 80.6
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 3.7e-144 515.4 344 80.2
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 6.2e-144 514.6 352 79.5
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.4e-143 513.5 350 79.1
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 1.8e-143 513.1 350 78.3
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 2.3e-138 496.1 358 75.7
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 8.7e-138 494.2 317 80.1
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 3.3e-137 492.3 279 88.2
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 9.7e-137 490.7 271 91.5
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.3e-136 490.3 318 81.8
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 2.2e-136 489.6 271 89.3
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 2.8e-136 489.2 273 88.6
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 6.3e-136 488.0 291 86.6
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 1.8e-135 486.5 281 86.8
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 1.8e-135 486.5 271 89.7
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 2.4e-135 486.1 270 90.0
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 4.1e-135 485.3 271 88.6
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 4.1e-135 485.3 271 90.4
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 5.3e-135 485.0 271 88.6
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 5.3e-135 485.0 271 88.9
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 2.6e-134 482.6 271 88.6
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 7.7e-134 481.1 303 81.2
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.3e-133 480.3 277 86.6
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.3e-133 480.3 303 80.2
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.3e-133 480.3 276 87.0
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 6.5e-133 478.0 317 77.3
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.1e-132 477.2 275 85.5
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.1e-132 477.2 271 86.7
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.4e-132 476.9 275 85.5
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 1.9e-132 476.5 271 87.8
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 2.5e-132 476.1 289 83.7
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.5e-132 476.1 289 83.7
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 2.5e-132 476.1 275 85.1
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 5.5e-132 474.9 290 81.4
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.4e-132 474.2 337 74.8
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.4e-132 474.2 337 74.8
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.6e-131 473.4 283 84.5
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.6e-131 473.4 289 83.0
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 3.6e-131 472.2 271 87.1
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 7.9e-131 471.1 271 86.7
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 7.9e-131 471.1 271 86.7
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.0e-130 470.7 271 85.2
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.0e-130 470.7 277 83.8
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 1.0e-130 470.7 278 84.9
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.4e-130 470.3 271 86.7
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.4e-130 470.3 271 86.7
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.4e-130 470.3 302 78.1
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 3.0e-130 469.2 271 86.0
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 3.0e-130 469.2 271 86.0
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 3.9e-130 468.8 271 86.3
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 8.8e-130 467.6 271 86.0
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 8.8e-130 467.6 271 85.6
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 2.0e-129 466.5 270 84.4
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 5.7e-129 464.9 271 85.2
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 9.7e-129 464.2 268 86.6
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 9.7e-129 464.2 268 86.6
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.3e-128 463.8 271 85.2
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 2.8e-128 462.6 270 84.4
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 1.1e-127 460.7 298 78.9
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.1e-127 460.7 275 84.4
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.1e-127 460.7 271 84.5
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 1.4e-127 460.3 287 80.1
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 4.1e-127 458.8 265 86.8
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 6.9e-127 458.0 290 80.0
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 2.0e-126 456.4 270 84.4
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 2.6e-126 456.1 281 81.1
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 1.0e-125 454.1 296 78.7
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 1.0e-125 454.1 271 82.7
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 1.3e-125 453.8 311 74.6
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 6.5e-125 451.4 281 82.9
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 6.5e-125 451.4 251 88.0
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 1.4e-124 450.3 256 89.1
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.4e-124 450.3 264 84.1
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 2.5e-124 449.5 335 73.1
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 3.2e-124 449.1 257 86.4
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 3.2e-124 449.1 270 83.7
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 5.5e-124 448.4 277 81.9
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.2e-123 447.2 270 83.3
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 1.2e-123 447.2 270 83.3
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.6e-123 446.8 271 81.9
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 2.1e-123 446.4 311 75.2
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 4.7e-123 445.3 359 71.0
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 6.1e-123 444.9 270 83.3
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.4e-122 443.7 277 80.5
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.8e-122 443.4 251 87.3
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.8e-122 443.4 277 80.9
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 3.9e-122 442.2 251 87.6
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.5e-121 440.3 275 79.6
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 1.5e-121 440.3 270 83.0
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 2.0e-121 439.9 259 83.8
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 4.4e-121 438.7 286 77.3
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 1.3e-120 437.2 294 76.2
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 3.7e-120 435.6 254 83.9
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 9.1e-119 431.0 260 81.2
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.6e-118 429.5 357 70.0
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.7e-117 426.8 251 86.1
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.2e-117 426.4 387 61.0
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.1e-116 424.1 285 74.7
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 1.1e-116 424.1 256 82.4
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.4e-111 407.1 243 81.5
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 5.0e-109 398.7 333 65.5
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 6.1e-107 391.7 221 87.3
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 3.0e-106 389.4 278 70.9
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 6.8e-106 388.3 275 72.0
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 1.2e-105 387.5 221 87.3
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 4.4e-105 385.6 252 74.6
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 7.5e-105 384.8 266 72.6
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.2e-104 383.3 251 74.1
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.1e-103 379.0 225 85.3
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 2.0e-102 376.7 221 83.3
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 4.2e-100 369.0 206 87.9
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 4.0e-98 362.5 206 87.4
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.3e-96 357.5 252 71.0
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.7e-93 347.1 289 67.5
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 9.5e-92 341.3 249 71.1
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 1.5e-89 334.0 199 82.9
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 3.2e-87 326.2 256 68.0
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 7.8e-62 241.9 132 87.9
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 1.4e-55 221.1 243 47.3
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 1.6e-54 217.6 248 48.4
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 6.2e-51 205.7 226 56.2
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 3.4e-41 173.3 258 35.7
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 4.5e-41 172.9 252 44.0
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.0e-37 160.2 109 76.1
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 6.7e-37 159.1 93 87.1
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.9e-36 157.5 91 87.9
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 4.3e-36 156.4 95 82.1
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 3.5e-30 136.7 84 86.9
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.3e-27 128.3 101 62.4
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 6.9e-26 122.5 64 92.2
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 8.7e-21 105.5 64 84.4
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 5.7e-20 102.8 115 46.1
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 5.5e-15 86.3 54 85.2
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 7.2e-15 85.9 44 95.5
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 9.1e-10 68.9 36 94.4
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 3.4e-09 67.0 33 87.9
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 2.9e-08 63.9 35 82.9
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 3.8e-08 63.5 37 78.4
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 1.4e-07 61.6 37 73.0
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 1.6e-06 58.2 40 82.5


User provided reference genes

Program Settings