Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G018200 Glycine max HOM05D007072 ORTHO05D008841 5.3e-108 394.4 208 100.0
Phvul.007G057300 Phaseolus vulgaris HOM05D007072 ORTHO05D008841 4.1e-100 368.2 208 92.8
Glyma.08G203200 Glycine max HOM05D007072 ORTHO05D008841 9.1e-100 367.1 208 92.3
VMungo0720G2696 Vigna mungo HOM05D007072 ORTHO05D008841 3.2e-97 358.6 208 91.3
Ca_10901_v3 Cicer arietinum L. HOM05D007072 ORTHO05D008841 8.0e-88 327.4 210 82.4
Lj5g0010864 Lotus japonicus HOM05D007072 ORTHO05D008841 2.3e-87 325.9 209 83.3
TPR.G5523 Trifolium pratense HOM05D007072 ORTHO05D008841 3.1e-84 315.5 211 81.5
Medtr1g103810 Medicago truncatula HOM05D007072 ORTHO05D008841 1.3e-82 310.1 210 82.9
arahy.Tifrunner.gnm1.ann1.0J3LZT Arachis hypogaea HOM05D007072 ORTHO05D008841 1.9e-81 306.2 211 78.2
Psat6g207520 Pisum sativum HOM05D007072 ORTHO05D008841 4.2e-81 305.1 209 78.5
arahy.Tifrunner.gnm1.ann1.KKZ0LN Arachis hypogaea HOM05D007072 ORTHO05D008841 1.6e-80 303.1 211 77.7
arahy.Tifrunner.gnm1.ann1.8ZA7N6 Arachis hypogaea HOM05D007072 ORTHO05D008841 6.1e-80 301.2 211 77.7
arahy.Tifrunner.gnm1.ann1.DZ7G8Z Arachis hypogaea HOM05D007072 ORTHO05D008841 2.7e-72 275.8 223 69.5
Haze_00902 Corylus avellana HOM05D007072 ORTHO05D008841 4.8e-69 265.0 211 68.2
Haze_03895 Corylus avellana HOM05D007072 ORTHO05D008841 9.1e-68 260.8 211 67.3
QL06p002505 Quercus lobata HOM05D007072 ORTHO05D008841 4.7e-64 248.4 207 65.7
CiPaw.01G165800 Carya illinoinensis HOM05D007072 ORTHO05D008841 6.1e-64 248.1 213 65.7
GSVIVG01017974001 Vitis vinifera HOM05D007072 ORTHO05D008841 1.4e-63 246.9 211 65.9
Prupe.1G013400 Prunus persica HOM05D007072 ORTHO05D008841 2.0e-62 243.0 207 67.1
Eucgr.L01273 Eucalyptus grandis HOM05D007072 ORTHO05D008841 2.8e-61 239.2 212 65.1
MD16G1193700 Malus domestica HOM05D007072 ORTHO05D008841 6.3e-61 238.0 208 64.9
Eucgr.L02492 Eucalyptus grandis HOM05D007072 ORTHO05D008841 3.1e-60 235.7 212 64.6
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 1.6e-59 233.4 184 68.5
TAR636G0958 Trochodendron aralioides HOM05D007072 ORTHO05D008841 2.0e-59 233.0 213 62.0
PGR142G1968 Punica granatum HOM05D007072 ORTHO05D008841 4.5e-59 231.9 213 62.9
CSS0014065 Camellia sinensis var. sinensis HOM05D007072 ORTHO05D008841 5.9e-59 231.5 212 60.8
Dinv13993 Davidia involucrata HOM05D007072 ORTHO05D008841 1.0e-58 230.7 211 60.7
Potri.008G152800 Populus trichocarpa HOM05D007072 ORTHO05D008841 1.0e-58 230.7 210 62.4
Lalb_Chr02g0140581 Lupinus albus HOM05D007072 ORTHO05D008841 1.3e-58 230.3 145 81.4
Thecc.04G231900 Theobroma cacao HOM05D007072 ORTHO05D008841 1.3e-58 230.3 211 61.6
COL.COLO4_04736 Corchorus olitorius HOM05D007072 ORTHO05D008841 5.0e-58 228.4 212 62.7
Sabra08G0116400 Salix brachista HOM05D007072 ORTHO05D008841 1.5e-57 226.9 239 56.5
TWI09G0189 Tripterygium wilfordii HOM05D007072 ORTHO05D008841 3.3e-57 225.7 210 64.3
Actinidia40146 Actinidia chinensis HOM05D007072 ORTHO05D008841 4.3e-57 225.3 183 68.3
Atru.ctg752_3.79 Acer truncatum HOM05D007072 ORTHO05D008841 7.3e-57 224.6 203 62.1
Duzib212G0309 Durio zibethinus HOM05D007072 ORTHO05D008841 2.1e-56 223.0 211 60.7
CANSAT78G1446 Cannabis sativa HOM05D007072 ORTHO05D008841 4.7e-56 221.9 178 68.0
ClCG06G006220 Citrullus lanatus HOM05D007072 ORTHO05D008841 1.0e-55 220.7 211 61.1
DCAR_030636 Daucus carota HOM05D007072 ORTHO05D008841 4.0e-55 218.8 183 64.5
Rhsim04G0202300 Rhododendron simsii HOM05D007072 ORTHO05D008841 6.8e-55 218.0 213 59.2
CsaV3_7G022520 Cucumis sativus L. HOM05D007072 ORTHO05D008841 8.9e-55 217.6 211 61.6
Nn4g26321 Nelumbo nucifera HOM05D007072 ORTHO05D008841 8.9e-55 217.6 213 60.1
MELO3C012648.2 Cucumis melo HOM05D007072 ORTHO05D008841 1.2e-54 217.2 214 60.7
Hma1.2p1_1344F.1_g277130 Hydrangea macrophylla HOM05D007072 ORTHO05D008841 1.2e-54 217.2 201 61.7
Manes.03G178700 Manihot esculenta HOM05D007072 ORTHO05D008841 2.6e-54 216.1 168 71.4
Sed0002009 Sechium edule HOM05D007072 ORTHO05D008841 2.6e-54 216.1 188 65.4
Lj3A735T48 Lonicera japonica HOM05D007072 ORTHO05D008841 5.8e-54 214.9 193 62.2
PGSC0003DMG400030078 Solanum tuberosum HOM05D007072 ORTHO05D008841 1.7e-53 213.4 211 58.8
Cc03_g03760 Coffea canephora HOM05D007072 ORTHO05D008841 2.9e-53 212.6 171 64.9
Sc19g0004160 Simmondsia chinensis HOM05D007072 ORTHO05D008841 4.9e-53 211.8 185 62.2
Peaxi162Scf00092g01012 Petunia axillaris HOM05D007072 ORTHO05D008841 1.4e-52 210.3 183 63.9
Aqoxy5G00468 Aquilegia oxysepala HOM05D007072 ORTHO05D008841 1.9e-52 209.9 209 56.9
ECA240G2950 Erigeron canadensis HOM05D007072 ORTHO05D008841 5.4e-52 208.4 180 63.3
Solyc09g076030.4 Solanum lycopersicum HOM05D007072 ORTHO05D008841 1.6e-51 206.8 211 57.8
Lsat_1_v5_gn_7_66201 Lactuca sativa HOM05D007072 ORTHO05D008841 2.0e-51 206.5 165 65.5
Sopen09g030860 Solanum pennellii HOM05D007072 ORTHO05D008841 2.0e-51 206.5 211 57.8
HanXRQChr03g0062521 Helianthus annuus HOM05D007072 ORTHO05D008841 3.5e-51 205.7 167 64.7
Nitab4.5_0000043g0120 Nicotiana tabacum HOM05D007072 ORTHO05D008841 7.8e-51 204.5 178 64.0
Oeu031231.1 Olea europaea HOM05D007072 ORTHO05D008841 1.0e-50 204.1 171 64.3
SalBow2G0955 Salvia bowleyana HOM05D007072 ORTHO05D008841 3.0e-50 202.6 208 59.1
Migut.G00337 Erythranthe guttata HOM05D007072 ORTHO05D008841 3.9e-50 202.2 214 57.9
RcHm_v2.0_Chr4g0416241 Rosa chinensis HOM05D007072 ORTHO05D008841 3.9e-50 202.2 210 58.1
Sp1g04270 Schrenkiella parvula HOM05D007072 ORTHO05D008841 6.6e-50 201.4 183 65.0
C05p03740 Brassica napus HOM05D007072 ORTHO05D008841 1.1e-49 200.7 182 63.2
CAN.G490.4 Capsicum annuum HOM05D007072 ORTHO05D008841 1.9e-49 199.9 209 56.5
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 3.3e-49 199.1 182 62.6
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 3.3e-49 199.1 182 63.2
PSO675G2050 Papaver somniferum HOM05D007072 ORTHO05D008841 3.3e-49 199.1 186 60.8
CARHR004900 Cardamine hirsuta HOM05D007072 ORTHO05D008841 9.5e-49 197.6 181 61.3
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 1.2e-48 197.2 184 62.0
BcaB02g06864 Brassica carinata HOM05D007072 ORTHO05D008841 1.6e-48 196.8 182 63.2
Thhalv10008840m.g Eutrema salsugineum HOM05D007072 ORTHO05D008841 1.6e-48 196.8 181 63.5
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 1.6e-48 196.8 178 65.2
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 1.6e-48 196.8 178 65.2
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 2.8e-48 196.1 182 62.6
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 2.8e-48 196.1 184 61.4
PSO732G0121 Papaver somniferum HOM05D007072 ORTHO05D008841 2.8e-48 196.1 189 58.7
Aa31LG1G19230 Aethionema arabicum HOM05D007072 ORTHO05D008841 4.7e-48 195.3 180 62.8
Hund12130 Selenicereus undatus HOM05D007072 ORTHO05D008841 4.7e-48 195.3 184 61.4
AT1G05385 Arabidopsis thaliana HOM05D007072 ORTHO05D008841 6.2e-48 194.9 162 67.9
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 1.1e-47 194.1 184 61.4
THA.LOC104800963 Tarenaya hassleriana HOM05D007072 ORTHO05D008841 1.1e-47 194.1 216 56.0
Carub.0001s0473 Capsella rubella HOM05D007072 ORTHO05D008841 1.4e-47 193.7 181 61.9
AL1G15220 Arabidopsis lyrata HOM05D007072 ORTHO05D008841 1.8e-47 193.4 131 77.1
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 1.8e-47 193.4 178 64.0
Rhsim04G0202400 Rhododendron simsii HOM05D007072 ORTHO05D008841 1.8e-47 193.4 140 69.3
ATR0733G024 Amborella trichopoda HOM05D007072 ORTHO05D008841 3.4e-46 189.1 152 65.1
Ah.04g154560 Amaranthus hybridus HOM05D007072 ORTHO05D008841 9.8e-46 187.6 139 72.7
AUR62034750 Chenopodium quinoa HOM05D007072 ORTHO05D008841 2.2e-45 186.4 168 61.3
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 6.4e-45 184.9 144 70.1
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 1.4e-44 183.7 176 58.5
EL10Ac2g03959 Beta vulgaris HOM05D007072 ORTHO05D008841 2.4e-44 183.0 176 60.2
AUR62033624 Chenopodium quinoa HOM05D007072 ORTHO05D008841 5.4e-44 181.8 139 69.8
EL10Ac4g08230 Beta vulgaris HOM05D007072 ORTHO05D008841 1.2e-43 180.6 194 55.2
SGA_v2.0_scaffold124G33503 Striga asiatica HOM05D007072 ORTHO05D008841 7.8e-43 177.9 206 54.4
HPP92_001955 Vanilla planifolia HOM05D007072 ORTHO05D008841 6.6e-42 174.9 175 56.6
Zm00001eb214960 Zea mays HOM05D007072 ORTHO05D008841 6.6e-42 174.9 184 56.5
Actinidia27161 Actinidia chinensis HOM05D007072 ORTHO05D008841 8.6e-42 174.5 190 55.3
Os03g0747700 Oryza sativa ssp. japonica HOM05D007072 ORTHO05D008841 1.1e-41 174.1 128 72.7
Pp3c8_18010 Physcomitrium patens HOM05D007072 ORTHO05D008841 9.5e-33 144.4 137 53.3
Nitab4.5_0001560g0030 Nicotiana tabacum HOM05D007072 ORTHO05D008841 1.1e-31 141.0 132 59.8
CDE10G0502 Ceratophyllum demersum HOM05D007072 ORTHO05D008841 1.4e-31 140.6 101 71.3
Mapoly0045s0091 Marchantia polymorpha HOM05D007072 ORTHO05D008841 2.6e-30 136.3 170 45.9
SMO347G0486 Selaginella moellendorffii HOM05D007072 ORTHO05D008841 1.6e-27 127.1 134 48.5
CBR_g41625 Chara braunii HOM05D007072 ORTHO05D008841 3.9e-26 122.5 156 43.6
SEGI_01006 Sequoiadendron giganteum HOM05D007072 ORTHO05D008841 1.1e-23 114.4 124 54.0
RcHm_v2.0_Chr4g0430981 Rosa chinensis HOM05D007072 ORTHO05D008841 2.2e-21 106.7 116 56.0
MBI05_g43294_MAGBIO Magnolia biondii HOM05D007072 ORTHO05D008841 7.1e-20 101.7 70 74.3
AagrBONN_evm.TU.Sc2ySwM_228.1232 Anthoceros agrestis HOM05D007072 ORTHO05D008841 3.3e-17 92.8 116 45.7
Cre02.g073850 Chlamydomonas reinhardtii HOM05D007072 ORTHO05D008841 9.0e-07 58.2 108 31.5


User provided reference genes

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