Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 6.3e-54 213.8 102 100.0
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.3e-51 206.1 102 96.1
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 2.9e-51 204.9 102 95.1
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 8.8e-48 193.4 102 88.2
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 5.7e-47 190.7 96 91.7
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.0e-43 179.9 100 83.0
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-43 179.1 96 87.5
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-43 179.1 96 87.5
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-43 179.1 96 87.5
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 3.8e-43 177.9 98 85.7
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 3.8e-43 177.9 98 85.7
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 5.0e-43 177.6 100 82.0
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 3.2e-42 174.9 100 81.0
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.8e-40 169.1 100 79.0
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 5.2e-40 167.5 91 84.6
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 1.5e-39 166.0 97 78.4
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 2.6e-39 165.2 97 78.4
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 5.7e-39 164.1 98 76.5
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 4.8e-38 161.0 97 76.3
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 6.3e-38 160.6 97 78.4
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 1.1e-37 159.8 97 76.3
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 1.2e-36 156.4 97 73.2
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 1.6e-36 156.0 98 73.5
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 2.7e-36 155.2 97 75.3
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.5e-36 154.8 89 83.1
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 4.5e-36 154.5 94 75.5
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 5.9e-36 154.1 82 86.6
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 5.9e-36 154.1 82 86.6
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 5.9e-36 154.1 98 72.4
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 7.7e-36 153.7 97 74.2
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.0e-35 153.3 97 72.2
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.0e-35 153.3 95 75.8
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.7e-35 152.5 95 74.7
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 5.0e-35 151.0 95 74.7
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 8.5e-35 150.2 97 73.2
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.1e-34 149.8 96 72.9
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 1.5e-34 149.4 97 72.2
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.5e-34 149.4 78 84.6
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.5e-34 149.4 94 74.5
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.5e-34 149.4 78 84.6
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.9e-34 149.1 79 83.5
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 1.9e-34 149.1 98 71.4
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.5e-34 148.7 85 80.0
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.5e-34 148.7 96 71.9
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.5e-34 148.7 86 79.1
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 3.2e-34 148.3 80 80.0
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.2e-34 148.3 85 81.2
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 4.2e-34 147.9 85 80.0
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.2e-34 147.9 93 73.1
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 5.5e-34 147.5 82 80.5
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 5.5e-34 147.5 92 75.0
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 7.2e-34 147.1 94 72.3
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 9.4e-34 146.7 80 78.8
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 9.4e-34 146.7 86 79.1
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 9.4e-34 146.7 86 79.1
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 9.4e-34 146.7 86 79.1
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.6e-33 146.0 84 78.6
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 3.6e-33 144.8 85 78.8
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 3.6e-33 144.8 81 77.8
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 4.7e-33 144.4 119 62.2
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 4.7e-33 144.4 79 81.0
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 6.1e-33 144.1 79 79.7
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 8.0e-33 143.7 93 73.1
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 8.0e-33 143.7 97 69.1
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 8.0e-33 143.7 95 70.5
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.0e-32 143.3 79 79.7
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.0e-32 143.3 85 75.3
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.0e-32 143.3 78 82.1
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.0e-32 143.3 97 66.0
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.0e-32 143.3 97 66.0
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.0e-32 143.3 99 68.7
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 2.3e-32 142.1 94 69.1
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.3e-32 142.1 89 75.3
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 2.3e-32 142.1 79 79.7
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.0e-32 141.7 96 67.7
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 6.8e-32 140.6 99 66.7
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 6.8e-32 140.6 104 66.3
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 8.8e-32 140.2 97 69.1
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.5e-31 139.4 97 64.9
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 5.7e-31 137.5 78 76.9
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 5.7e-31 137.5 83 72.3
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 9.8e-31 136.7 80 76.2
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 9.8e-31 136.7 80 76.2
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 9.8e-31 136.7 78 76.9
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.3e-30 136.3 78 76.9
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.3e-30 136.3 78 76.9
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.3e-30 136.3 78 76.9
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.3e-30 136.3 78 76.9
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.7e-30 136.0 87 72.4
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.8e-30 135.2 76 78.9
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 3.7e-30 134.8 77 77.9
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 3.7e-30 134.8 77 77.9
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 8.3e-30 133.7 78 75.6
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 8.3e-30 133.7 78 75.6
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 8.3e-30 133.7 85 76.5
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 8.3e-30 133.7 86 70.9
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.1e-29 133.3 78 74.4
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.8e-29 132.5 85 75.3
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 4.1e-29 131.3 79 73.4
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 4.1e-29 131.3 79 73.4
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 7.0e-29 130.6 76 76.3
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 7.0e-29 130.6 65 90.8
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 2.0e-28 129.0 68 86.8
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 2.7e-28 128.6 65 86.2
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 7.7e-28 127.1 106 57.5
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.0e-27 126.7 65 86.2
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 2.9e-27 125.2 75 72.0
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 2.9e-27 125.2 75 72.0
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 8.6e-27 123.6 85 68.2
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 2.5e-26 122.1 86 64.0
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.0e-24 116.7 82 62.2
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 2.3e-24 115.5 82 62.2
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 5.2e-24 114.4 63 79.4
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 2.0e-23 112.5 70 72.9
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 5.7e-23 110.9 63 77.8
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.3e-22 109.8 90 61.1
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 3.7e-22 108.2 62 77.4
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 2.4e-21 105.5 76 59.2
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 4.1e-21 104.8 65 69.2
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.1e-21 104.8 82 62.2
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.0e-20 102.4 53 79.2
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 3.5e-20 101.7 103 48.5
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 3.8e-19 98.2 63 68.3
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 3.8e-19 98.2 52 84.6
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 1.1e-18 96.7 64 67.2
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 8.9e-16 87.0 57 68.4
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 4.4e-15 84.7 58 62.1
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.2e-14 82.4 54 72.2
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 1.1e-13 80.1 76 50.0
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 4.1e-13 78.2 73 50.7
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 4.1e-13 78.2 80 47.5
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.0e-12 75.9 46 73.9
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 4.6e-12 74.7 46 69.6
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 1.3e-11 73.2 80 47.5
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 3.9e-11 71.6 32 93.8
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 8.0e-09 63.9 64 45.3


User provided reference genes

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