Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 9.9e-214 746.5 374 100.0
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 3.7e-184 648.3 371 89.5
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 4.1e-135 485.3 388 70.1
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 1.9e-132 476.5 387 68.0
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 6.8e-106 388.3 422 55.0
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.9e-104 382.9 417 54.9
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.9e-104 382.9 417 54.9
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 3.2e-103 379.4 435 53.1
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 9.2e-103 377.9 413 53.5
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 6.0e-102 375.2 466 49.8
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 5.6e-92 342.0 435 48.7
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 4.2e-87 325.9 430 48.8
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 7.8e-86 321.6 437 46.0
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 1.0e-85 321.2 430 48.8
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 3.3e-84 316.2 437 46.0
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 9.6e-84 314.7 436 44.7
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 1.4e-82 310.8 439 45.6
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 2.9e-80 303.1 444 45.3
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 1.4e-79 300.8 437 45.5
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 7.1e-79 298.5 439 44.6
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 9.3e-79 298.1 439 44.0
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 4.8e-75 285.8 429 44.8
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 1.8e-74 283.9 429 44.3
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 1.2e-73 281.2 431 43.6
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 7.6e-73 278.5 428 43.0
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.7e-72 277.3 429 44.3
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.7e-72 277.3 429 44.3
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.7e-70 270.0 438 42.7
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.3e-69 267.7 427 41.5
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 2.3e-69 266.9 431 43.2
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 3.9e-69 266.2 443 42.7
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 8.7e-69 265.0 436 41.1
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 9.6e-68 261.5 432 41.4
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 2.1e-67 260.4 427 40.3
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 2.8e-67 260.0 440 41.6
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 6.2e-67 258.8 427 40.0
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.8e-66 257.3 444 40.5
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 5.8e-65 252.3 408 42.9
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 7.6e-65 251.9 447 39.8
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 3.8e-64 249.6 440 40.9
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 1.1e-63 248.1 433 40.9
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 1.2e-62 244.6 408 42.4
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.1e-62 243.8 445 40.7
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 6.0e-62 242.3 426 41.8
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 3.9e-61 239.6 420 39.8
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 3.3e-60 236.5 422 41.2
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 1.6e-59 234.2 471 38.6
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 1.6e-59 234.2 471 37.4
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 3.7e-59 233.0 447 38.7
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 1.8e-58 230.7 422 38.6
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 9.0e-58 228.4 464 38.4
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 4.5e-57 226.1 487 36.3
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 4.5e-57 226.1 409 37.9
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 5.9e-57 225.7 438 36.5
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 5.0e-56 222.6 400 39.5
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 2.3e-53 213.8 434 35.7
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 3.0e-53 213.4 431 35.7
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 3.0e-53 213.4 392 40.8
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 3.0e-53 213.4 421 38.0
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 8.8e-53 211.8 424 37.0
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 7.4e-52 208.8 437 39.6
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 9.7e-52 208.4 437 39.8
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 4.8e-51 206.1 418 38.0
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 4.8e-51 206.1 392 38.5
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 3.1e-50 203.4 433 34.6
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 2.2e-48 197.2 419 37.2
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 3.8e-48 196.4 421 38.5
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 6.5e-48 195.7 452 34.3
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 1.4e-47 194.5 413 35.8
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.5e-47 193.7 421 38.2
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 1.2e-46 191.4 428 38.3
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.6e-46 191.0 415 36.4
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 2.1e-46 190.7 452 35.6
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 4.7e-46 189.5 428 36.4
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 6.1e-46 189.1 442 35.7
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 7.9e-46 188.7 418 36.1
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 7.9e-46 188.7 417 38.4
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 7.9e-46 188.7 459 34.0
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 8.8e-45 185.3 443 34.1
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 1.5e-44 184.5 429 35.2
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 2.6e-44 183.7 483 33.1
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 4.4e-44 183.0 462 34.0
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 1.3e-43 181.4 416 36.8
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 3.7e-43 179.9 478 35.8
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.1e-42 178.3 420 36.9
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 1.2e-41 174.9 437 34.1
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 1.2e-41 174.9 421 34.7
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 1.7e-40 171.0 483 31.9
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 2.2e-40 170.6 435 33.8
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 5.0e-40 169.5 371 37.2
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 2.5e-39 167.2 458 34.1
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 1.2e-38 164.9 482 31.3
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 3.6e-38 163.3 437 32.3
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 3.6e-38 163.3 437 32.3
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 1.0e-37 161.8 385 35.6
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 2.0e-36 157.5 422 34.4
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 2.0e-36 157.5 238 46.2
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 7.4e-36 155.6 402 32.6
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 1.7e-35 154.5 427 33.5
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 1.7e-35 154.5 427 33.5
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 1.7e-35 154.5 427 33.5
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 2.8e-35 153.7 434 33.6
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.1e-34 151.8 312 38.5
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 1.8e-34 151.0 230 43.9
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 1.2e-33 148.3 381 34.1
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.6e-25 121.3 228 38.6
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 2.6e-20 104.0 332 31.0
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.2e-19 100.9 215 34.0
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 2.2e-19 100.9 467 26.3
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 7.0e-18 95.9 146 41.1
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 1.2e-14 85.1 321 28.0
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 6.1e-14 82.8 224 33.0
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 8.3e-11 72.4 114 36.8
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 2.1e-06 57.8 119 31.9


User provided reference genes

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