Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.6e-130 469.5 254 100.0
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 4.5e-117 424.9 254 91.7
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.9e-115 419.5 255 89.8
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.3e-113 413.3 251 90.8
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.6e-106 389.8 254 82.3
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 2.7e-106 389.0 256 85.2
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 6.7e-105 384.4 256 83.2
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.8e-102 376.3 255 80.8
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.8e-102 376.3 255 80.8
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 7.9e-98 360.9 257 80.9
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 1.4e-97 360.1 255 78.8
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 5.1e-97 358.2 253 78.7
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 6.7e-97 357.8 255 76.1
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 8.8e-97 357.5 252 76.6
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.5e-96 355.9 257 76.7
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 8.2e-95 350.9 257 76.7
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 2.4e-94 349.4 257 76.3
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 6.9e-94 347.8 256 76.2
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 9.1e-94 347.4 257 76.3
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.2e-93 347.1 257 75.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.5e-93 346.7 251 77.3
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 3.4e-93 345.5 251 76.9
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 7.7e-93 344.4 254 76.0
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.0e-92 344.0 254 76.0
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.7e-92 343.2 249 75.9
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 2.9e-92 342.4 255 74.5
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 3.2e-91 339.0 251 75.3
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 3.2e-91 339.0 254 73.2
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 3.2e-91 339.0 254 73.2
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 5.5e-91 338.2 260 73.1
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 7.2e-91 337.8 256 75.0
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 9.4e-91 337.4 255 71.0
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 9.4e-91 337.4 254 73.6
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.6e-90 336.7 256 74.6
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 2.7e-90 335.9 257 72.0
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.4e-89 333.6 267 71.5
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 6.7e-89 331.3 254 72.4
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 8.8e-89 330.9 245 74.3
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 2.0e-88 329.7 254 72.0
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 2.6e-88 329.3 254 72.0
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 3.3e-88 328.9 255 71.8
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.3e-88 328.9 256 70.3
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 4.4e-88 328.6 250 71.6
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.3e-87 327.0 249 71.9
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.8e-87 325.9 255 70.2
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 6.3e-87 324.7 255 71.0
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 6.3e-87 324.7 258 72.5
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 8.2e-87 324.3 247 71.7
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.1e-86 322.4 250 68.8
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.1e-86 322.4 259 69.1
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 3.1e-86 322.4 254 72.0
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.1e-86 322.4 252 71.0
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 3.1e-86 322.4 250 69.2
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.6e-85 319.3 254 71.3
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 3.5e-85 318.9 248 73.8
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 4.5e-85 318.5 258 70.5
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 5.9e-85 318.2 240 74.6
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 7.7e-85 317.8 348 56.6
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.0e-84 317.4 245 70.2
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 2.2e-84 316.2 250 68.0
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.1e-83 313.9 257 70.4
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.5e-83 313.5 245 69.4
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.5e-83 313.5 258 69.0
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 2.5e-83 312.8 246 70.7
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 4.2e-83 312.0 250 70.0
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 5.5e-83 311.6 245 68.2
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 5.5e-83 311.6 241 69.7
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.6e-82 310.1 257 68.5
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.7e-82 309.3 250 70.0
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 6.1e-82 308.1 246 68.7
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 8.0e-82 307.8 255 69.4
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.0e-81 307.4 255 67.5
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.8e-81 306.6 245 67.3
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 5.2e-81 305.1 249 69.5
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.1e-80 303.9 244 69.7
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.5e-80 303.5 252 69.4
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.5e-80 303.5 246 67.5
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.0e-80 303.1 257 67.3
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 4.4e-80 302.0 257 66.1
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 7.5e-80 301.2 237 68.8
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 7.5e-80 301.2 257 66.9
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 9.7e-80 300.8 250 70.0
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.8e-79 299.3 205 72.2
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 8.2e-79 297.7 236 68.2
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.1e-78 297.4 273 62.6
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 3.1e-78 295.8 244 66.8
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 3.1e-78 295.8 256 67.6
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 7.0e-78 294.7 248 67.3
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 9.1e-78 294.3 259 62.5
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 9.1e-78 294.3 236 67.4
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.6e-77 293.5 235 67.2
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 2.0e-77 293.1 205 72.7
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.7e-77 292.7 247 64.8
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 6.5e-76 288.1 248 65.3
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 6.5e-76 288.1 248 65.3
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.9e-75 286.6 231 68.0
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 2.5e-75 286.2 242 65.3
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 5.5e-75 285.0 248 64.5
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.1e-74 283.1 244 64.3
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 3.6e-74 282.3 252 64.3
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 3.6e-74 282.3 277 62.5
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 4.7e-74 282.0 242 64.5
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 2.3e-73 279.6 194 71.1
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 3.0e-73 279.3 250 64.8
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.2e-72 277.3 245 65.3
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 9.8e-72 274.2 297 57.2
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.7e-71 273.5 250 60.0
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.7e-68 263.5 334 50.6
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 3.8e-68 262.3 255 62.0
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.5e-68 261.5 243 59.3
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 2.3e-65 253.1 245 61.2
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 6.8e-65 251.5 290 54.5
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 8.8e-65 251.1 255 58.8
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.5e-64 248.1 251 56.2
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 5.9e-61 238.4 171 72.5
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.5e-59 233.8 252 56.0
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.5e-59 233.0 244 59.8
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 2.0e-56 223.4 250 55.6
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.7e-55 219.2 253 53.8
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 5.4e-54 215.3 227 52.0
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 7.0e-54 214.9 247 54.7
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 6.6e-52 208.4 148 71.6
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.5e-51 207.2 214 56.1
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 5.8e-48 195.3 165 70.3
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.6e-45 187.2 137 72.3
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.5e-43 180.6 132 70.5
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-41 174.5 144 63.2
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.4e-41 174.1 149 70.5
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.2e-39 166.8 142 63.4
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 3.5e-37 159.5 256 42.6
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.5e-35 154.1 189 46.6
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.9e-35 153.7 186 53.8
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 3.6e-34 149.4 229 41.0
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.3e-31 141.0 342 37.7
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 3.5e-29 132.9 244 35.7
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 6.6e-28 128.6 107 64.5
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.9e-27 127.1 215 36.7
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 2.5e-27 126.7 120 63.3
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.2e-22 109.8 60 83.3
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 4.2e-22 109.4 92 57.6
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.0e-20 104.8 72 72.2
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 2.4e-17 93.6 79 55.7
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 5.3e-17 92.4 79 57.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 9.0e-17 91.7 78 76.9
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.9e-12 76.3 209 32.1
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 5.6e-11 72.4 161 36.0
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 4.9e-07 59.3 53 60.4


User provided reference genes

Program Settings