Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.1e-78 297.0 196 100.0
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 5.0e-68 261.5 195 84.6
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 2.3e-60 236.1 197 78.7
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 2.2e-55 219.5 196 76.5
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.6e-53 213.4 196 81.1
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 4.4e-48 195.3 197 78.2
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 8.4e-47 191.0 219 74.0
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 7.1e-46 188.0 200 76.0
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.7e-45 186.0 229 71.2
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 1.8e-41 173.3 101 88.1
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 1.1e-38 164.1 88 95.5
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 9.3e-38 161.0 98 83.7
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 7.9e-37 157.9 98 81.6
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 2.3e-36 156.4 97 79.4
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 3.9e-36 155.6 98 80.6
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 6.7e-36 154.8 199 65.3
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 8.7e-36 154.5 97 79.4
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 8.7e-36 154.5 97 79.4
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.1e-35 154.1 99 79.8
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.9e-35 153.3 97 78.4
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.9e-35 153.3 194 55.2
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 1.9e-35 153.3 95 81.1
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.5e-35 152.9 87 92.0
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 2.5e-35 152.9 98 80.6
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 5.6e-35 151.8 99 78.8
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 7.4e-35 151.4 196 68.4
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 9.6e-35 151.0 99 75.8
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.3e-34 150.6 196 66.8
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 1.6e-34 150.2 197 68.0
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 2.1e-34 149.8 191 61.8
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 2.8e-34 149.4 197 64.5
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 3.7e-34 149.1 99 76.8
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 4.8e-34 148.7 96 78.1
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 8.1e-34 147.9 96 77.1
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 8.1e-34 147.9 96 78.1
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 8.1e-34 147.9 201 60.7
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 1.1e-33 147.5 96 77.1
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.4e-33 147.1 97 75.3
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 3.1e-33 146.0 98 76.5
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.1e-33 146.0 99 76.8
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.1e-33 146.0 98 76.5
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 4.0e-33 145.6 97 74.2
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 1.2e-32 144.1 192 66.7
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 2.6e-32 142.9 199 66.8
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 3.4e-32 142.5 88 83.0
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 3.4e-32 142.5 196 67.3
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 9.9e-32 141.0 200 48.5
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 1.7e-31 140.2 194 52.6
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 1.7e-31 140.2 102 68.6
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.2e-31 139.8 99 70.7
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.8e-31 139.0 97 74.2
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 4.9e-31 138.7 99 68.7
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.1e-30 137.5 97 69.1
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 2.5e-30 136.3 197 63.5
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 7.1e-30 134.8 202 56.4
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 9.3e-30 134.4 194 62.9
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.1e-29 133.3 240 42.1
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 2.1e-29 133.3 100 65.0
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 2.7e-29 132.9 99 65.7
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 2.7e-29 132.9 198 57.1
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 3.5e-29 132.5 207 60.4
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 3.5e-29 132.5 96 67.7
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 1.0e-28 131.0 93 68.8
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.3e-28 130.6 98 69.4
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.3e-28 130.6 87 75.9
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.8e-28 130.2 79 82.3
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 2.3e-28 129.8 98 68.4
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 2.3e-28 129.8 97 70.1
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 3.0e-28 129.4 98 68.4
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 3.0e-28 129.4 98 68.4
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 3.9e-28 129.0 93 67.7
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 3.9e-28 129.0 94 70.2
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.1e-27 127.5 176 54.0
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.5e-27 127.1 99 64.6
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 1.5e-27 127.1 86 75.6
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.3e-27 125.9 100 64.0
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 9.6e-27 124.4 194 56.2
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 9.6e-27 124.4 79 79.7
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 2.4e-25 119.8 95 61.1
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 3.1e-25 119.4 90 64.4
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 3.1e-25 119.4 194 49.5
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 5.3e-25 118.6 91 64.8
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.0e-24 116.7 126 52.4
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 2.0e-24 116.7 198 55.6
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 2.0e-24 116.7 87 67.8
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 4.9e-23 112.1 96 61.5
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 8.4e-23 111.3 96 57.3
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 8.4e-23 111.3 96 57.3
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 8.4e-23 111.3 96 57.3
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 4.2e-22 109.0 82 68.3
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 5.5e-22 108.6 99 62.6
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 1.6e-21 107.1 88 69.3
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 1.6e-21 107.1 88 69.3
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 2.1e-21 106.7 92 55.4
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 2.1e-21 106.7 92 55.4
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 1.0e-20 104.4 99 56.6
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.8e-20 103.6 88 61.4
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 2.3e-20 103.2 97 60.8
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 5.1e-20 102.1 79 67.1
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 5.1e-20 102.1 79 67.1
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 2.2e-18 96.7 81 66.7
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 6.3e-18 95.1 96 50.0
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 9.0e-17 91.3 210 53.8
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.5e-16 89.0 66 68.2
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 1.3e-15 87.4 80 65.0
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 2.2e-15 86.7 79 62.0
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 5.0e-15 85.5 102 48.0
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 7.2e-14 81.6 80 62.5
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 2.1e-13 80.1 100 45.0
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.7e-13 79.7 80 55.0
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.0e-12 77.8 100 45.0
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 1.0e-12 77.8 48 77.1
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 1.0e-12 77.8 89 46.1
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 3.0e-12 76.3 198 46.5
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 1.3e-10 70.9 68 57.4
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 8.2e-10 68.2 88 47.7
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 1.1e-09 67.8 85 44.7
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 1.1e-09 67.8 50 64.0
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.6e-08 63.2 99 44.4
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.2e-07 60.1 59 49.2
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 2.2e-07 60.1 45 64.4
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 1.1e-06 57.8 60 45.0


User provided reference genes

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