Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 8.1e-38 160.2 100 100.0
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 5.1e-32 141.0 100 93.0
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 5.3e-21 104.4 85 84.7
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.2e-20 103.2 92 80.4
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 2.6e-20 102.1 93 77.4
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 7.6e-20 100.5 90 80.0
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 4.9e-19 97.8 90 78.9
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 1.1e-18 96.7 88 76.1
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 1.4e-18 96.3 86 77.9
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.6e-17 92.8 99 68.7
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.1e-17 92.4 90 74.4
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.1e-17 92.4 90 75.6
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.5e-17 91.7 89 71.9
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 4.6e-17 91.3 86 75.6
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 4.6e-17 91.3 89 71.9
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 6.0e-17 90.9 91 74.7
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.3e-16 89.7 91 72.5
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 2.3e-16 89.0 94 69.1
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.0e-16 88.6 87 74.7
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 3.9e-16 88.2 89 75.3
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 1.9e-15 85.9 87 74.7
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 3.3e-15 85.1 83 74.7
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 3.3e-15 85.1 97 67.0
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 3.3e-15 85.1 89 71.9
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 4.3e-15 84.7 80 76.2
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 7.4e-15 84.0 90 71.1
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.3e-14 83.2 89 69.7
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 1.3e-14 83.2 89 69.7
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 1.6e-14 82.8 76 76.3
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.1e-14 82.4 89 68.5
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 2.1e-14 82.4 90 66.7
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 4.8e-14 81.3 89 71.9
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 6.2e-14 80.9 99 66.7
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 8.1e-14 80.5 89 66.3
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 8.1e-14 80.5 88 67.0
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 8.1e-14 80.5 85 76.5
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 8.1e-14 80.5 89 68.5
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.1e-13 80.1 75 76.0
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 1.4e-13 79.7 99 66.7
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.4e-13 79.7 100 63.0
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.4e-13 79.7 100 63.0
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.4e-13 79.7 86 69.8
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.8e-13 79.3 97 62.9
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 2.4e-13 79.0 84 67.9
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 3.1e-13 78.6 88 65.9
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 5.3e-13 77.8 88 64.8
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 9.0e-13 77.0 79 57.0
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.2e-12 76.6 83 71.1
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.2e-12 76.6 78 73.1
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.5e-12 76.3 86 70.9
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.0e-12 75.9 72 76.4
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.6e-12 75.5 90 68.9
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 2.6e-12 75.5 90 65.6
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.6e-12 75.5 88 70.5
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.5e-12 74.7 90 62.2
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 4.5e-12 74.7 80 72.5
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 5.8e-12 74.3 87 71.3
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 7.6e-12 73.9 87 64.4
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 7.6e-12 73.9 90 63.3
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.6e-12 73.9 90 63.3
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 7.6e-12 73.9 76 72.4
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.3e-11 73.2 92 63.0
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.3e-11 73.2 54 64.8
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.3e-11 73.2 90 61.1
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.7e-11 72.8 90 63.3
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 1.7e-11 72.8 91 67.0
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 2.2e-11 72.4 81 71.6
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.2e-11 72.4 84 64.3
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.9e-11 72.0 90 58.9
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.9e-11 72.0 84 69.0
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 2.9e-11 72.0 88 63.6
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 2.9e-11 72.0 91 59.3
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 3.8e-11 71.6 91 49.5
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 6.5e-11 70.9 87 65.5
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 6.5e-11 70.9 77 67.5
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 8.4e-11 70.5 97 66.0
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 8.4e-11 70.5 79 69.6
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 8.4e-11 70.5 88 64.8
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.1e-10 70.1 78 64.1
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-10 70.1 90 61.1
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.1e-10 70.1 81 70.4
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.4e-10 69.7 88 63.6
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 2.5e-10 68.9 48 68.8
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.5e-10 68.9 78 70.5
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 3.2e-10 68.6 75 46.7
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 4.2e-10 68.2 61 62.3
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 4.2e-10 68.2 79 50.6
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 4.2e-10 68.2 98 62.2
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 5.5e-10 67.8 97 59.8
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 5.5e-10 67.8 79 68.4
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 7.1e-10 67.4 89 66.3
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 7.1e-10 67.4 81 66.7
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 9.3e-10 67.0 92 57.6
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 9.3e-10 67.0 72 73.6
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.6e-09 66.2 78 65.4
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 1.6e-09 66.2 78 67.9
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.6e-09 66.2 79 67.1
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.6e-09 66.2 77 67.5
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.1e-09 65.9 79 67.1
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 4.6e-09 64.7 76 67.1
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 4.6e-09 64.7 49 65.3
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 6.0e-09 64.3 99 58.6
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 7.9e-09 63.9 80 42.5
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 7.9e-09 63.9 112 54.5
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.0e-08 63.5 83 61.4
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.0e-08 63.5 52 63.5
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.0e-08 63.5 96 58.3
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.3e-08 63.2 81 42.0
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.8e-08 62.8 52 61.5
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.8e-08 62.8 90 47.8
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 2.3e-08 62.4 74 48.6
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 3.0e-08 62.0 86 46.5
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.9e-08 61.6 84 45.2
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 6.7e-08 60.8 83 61.4
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 6.7e-08 60.8 100 45.0
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.1e-07 60.1 89 62.9
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 1.1e-07 60.1 82 46.3
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.1e-07 60.1 130 35.4
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-07 59.7 50 64.0
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-07 59.7 50 64.0
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.5e-07 59.7 50 64.0
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.5e-07 59.7 64 46.9
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.5e-07 59.7 88 44.3
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.9e-07 59.3 130 33.8
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 1.9e-07 59.3 87 56.3
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 2.5e-07 58.9 60 60.0
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 2.5e-07 58.9 77 62.3
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 3.3e-07 58.5 126 35.7
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 4.3e-07 58.2 120 44.2
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 4.3e-07 58.2 90 44.4
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 5.7e-07 57.8 130 42.3
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 5.7e-07 57.8 99 37.4
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 5.7e-07 57.8 87 60.9
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 9.6e-07 57.0 73 39.7
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 1.3e-06 56.6 58 53.4
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 1.3e-06 56.6 130 44.6
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.3e-06 56.6 74 67.6
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.6e-06 56.2 82 58.5
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 2.1e-06 55.8 77 45.5
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.1e-06 55.8 40 67.5
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.8e-06 55.5 128 34.4
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 3.7e-06 55.1 80 62.5
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.7e-06 55.1 53 54.7
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 6.2e-06 54.3 130 33.8
AUR62001519 Chenopodium quinoa HOM05D003238 ORTHO05D003571 6.2e-06 54.3 83 60.2


User provided reference genes

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