Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 2.2e-154 548.9 277 100.0
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 5.6e-121 438.0 279 83.9
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 1.8e-111 406.4 271 80.1
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 8.3e-109 397.5 270 77.8
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 1.0e-106 390.6 291 73.9
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 3.9e-106 388.7 251 80.9
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 2.6e-102 375.9 279 70.3
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 9.9e-102 374.0 284 70.4
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 2.9e-101 372.5 281 70.5
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 1.1e-100 370.5 226 82.3
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 5.4e-100 368.2 224 83.5
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 1.6e-99 366.7 284 69.0
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 2.7e-99 365.9 249 75.9
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 1.3e-98 363.6 222 82.9
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 2.3e-98 362.8 230 81.7
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 3.9e-98 362.1 247 80.6
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 5.1e-98 361.7 225 81.3
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 6.6e-98 361.3 225 82.7
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 8.6e-98 360.9 230 80.0
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 3.3e-97 359.0 237 75.5
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 9.6e-97 357.5 225 81.8
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 1.8e-95 353.2 226 80.1
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 8.9e-95 350.9 225 78.7
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 2.6e-94 349.4 284 65.8
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 3.4e-94 349.0 226 77.0
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 3.4e-94 349.0 222 81.1
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 4.4e-94 348.6 284 66.2
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 1.3e-93 347.1 284 65.5
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 1.7e-93 346.7 225 76.9
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 5.4e-92 341.7 251 70.9
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 1.2e-91 340.5 234 75.2
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 1.2e-91 340.5 271 67.2
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 2.1e-91 339.7 224 76.8
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 4.6e-91 338.6 252 71.8
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 7.8e-91 337.8 241 72.2
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 3.0e-90 335.9 225 76.9
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 3.0e-90 335.9 258 65.9
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 3.9e-90 335.5 252 69.8
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 8.7e-90 334.3 223 73.5
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 1.1e-89 334.0 225 73.8
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 1.1e-89 334.0 238 71.8
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 1.1e-89 334.0 225 73.3
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 1.5e-89 333.6 225 73.8
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 1.5e-89 333.6 225 73.8
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 2.5e-89 332.8 238 68.1
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 7.3e-89 331.3 225 74.2
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 2.8e-88 329.3 236 72.9
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 2.8e-88 329.3 225 74.2
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 2.8e-88 329.3 254 68.5
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 3.6e-88 328.9 225 72.4
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 4.8e-88 328.6 225 72.9
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 4.8e-88 328.6 223 71.7
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 6.2e-88 328.2 288 60.8
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 8.1e-88 327.8 222 73.9
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 1.4e-87 327.0 242 69.4
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 1.8e-87 326.6 224 75.9
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 3.1e-87 325.9 241 69.7
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 4.0e-87 325.5 233 70.8
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 4.0e-87 325.5 223 73.1
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 3.4e-86 322.4 289 60.2
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 9.9e-86 320.9 207 79.7
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 1.3e-85 320.5 226 71.7
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 1.7e-85 320.1 224 71.4
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 1.1e-84 317.4 227 71.8
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 9.3e-84 314.3 266 61.7
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.6e-83 313.5 222 72.1
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 1.6e-83 313.5 294 58.5
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 2.1e-83 313.2 229 71.2
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 6.0e-83 311.6 224 70.5
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 7.9e-83 311.2 220 70.0
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 2.3e-82 309.7 313 58.1
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 5.1e-82 308.5 170 91.8
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 6.6e-82 308.1 224 70.1
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 1.5e-81 307.0 225 67.1
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 1.9e-81 306.6 260 60.8
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 7.4e-81 304.7 223 70.9
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 2.1e-80 303.1 238 66.0
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 9.9e-78 294.3 191 77.5
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 1.3e-77 293.9 185 80.0
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 2.4e-76 289.7 230 69.1
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 3.2e-76 289.3 180 81.1
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.6e-72 276.9 193 72.0
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 2.1e-72 276.6 275 57.5
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 3.2e-68 262.7 185 70.8
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 1.6e-64 250.4 233 58.8
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 4.8e-64 248.8 277 53.1
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 8.2e-64 248.1 189 68.8
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 2.2e-61 240.0 244 52.9
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 8.5e-61 238.0 209 59.3
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 1.1e-60 237.7 243 51.9
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 1.2e-59 234.2 189 67.2
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 3.9e-58 229.2 143 77.6
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 5.3e-55 218.8 199 60.3
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.2e-54 217.6 204 52.5
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 1.5e-54 217.2 329 44.4
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 1.0e-53 214.5 190 61.6
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 2.3e-50 203.4 145 69.7
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 3.8e-45 186.0 144 68.1
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 3.0e-34 149.8 88 86.4
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 3.5e-30 136.3 173 49.1
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 8.5e-29 131.7 83 74.7
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.5e-28 131.0 145 44.1
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 1.4e-26 124.4 250 35.2
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 3.4e-25 119.8 242 33.1
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 1.7e-21 107.5 60 85.0
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 9.5e-12 75.1 238 29.4
SEGI_22906 Sequoiadendron giganteum HOM05D002234 ORTHO05D002254 2.8e-11 73.6 275 27.3
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 4.7e-11 72.8 38 89.5
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 4.7e-11 72.8 38 89.5
Aqoxy3G02205 Aquilegia oxysepala HOM05D002234 ORTHO05D002254 6.1e-11 72.4 240 29.6
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 2.3e-10 70.5 38 86.8
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 2.3e-10 70.5 255 27.5
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 3.0e-10 70.1 124 37.9
Lalb_Chr16g0381141 Lupinus albus HOM05D002234 ORTHO05D002254 2.6e-09 67.0 237 28.7
THA.LOC104812983 Tarenaya hassleriana HOM05D002234 ORTHO05D002254 2.6e-09 67.0 237 28.3
MSTRG.12171 Avicennia marina HOM05D002234 ORTHO05D002254 7.5e-09 65.5 237 29.1
Psat2g138880 Pisum sativum HOM05D002234 ORTHO05D002254 1.3e-08 64.7 238 26.5
Psat7g265360 Pisum sativum HOM05D007122 ORTHO05D008918 1.3e-08 64.7 65 56.9
TPR.G8085 Trifolium pratense HOM05D002234 ORTHO05D002254 2.2e-08 63.9 236 26.3
MELO3C007423.2 Cucumis melo HOM05D002234 ORTHO05D002254 2.9e-08 63.5 236 28.8
Medtr5g029590 Medicago truncatula HOM05D002234 ORTHO05D002254 2.9e-08 63.5 238 26.5
CiPaw.12G067500 Carya illinoinensis HOM05D002234 ORTHO05D002254 3.2e-07 60.1 231 29.0
PRCOL_00002778 Prasinoderma coloniale HOM05D007122 ORTHO05D008918 4.1e-07 59.7 167 32.9
MSTRG.13126 Avicennia marina HOM05D002234 ORTHO05D002254 7.0e-07 58.9 236 24.6
Cre14.g611450 Chlamydomonas reinhardtii HOM05D002234 ORTHO05D002254 7.0e-07 58.9 88 38.6
PSO210G7268 Papaver somniferum HOM05D002234 ORTHO05D002254 7.0e-07 58.9 236 24.6
SEGI_07464 Sequoiadendron giganteum HOM05D002234 ORTHO05D002254 7.0e-07 58.9 240 26.7
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 7.0e-07 58.9 238 25.2
Ca_25189_v3 Cicer arietinum L. HOM05D002234 ORTHO05D002254 9.2e-07 58.5 235 27.2
Oeu028866.1 Olea europaea HOM05D002234 ORTHO05D002254 9.2e-07 58.5 243 26.3
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 7.8e-06 55.5 115 30.4


User provided reference genes

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