Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 2.5e-56 221.9 112 100.0
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 1.1e-27 126.7 71 94.4
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 1.1e-27 126.7 71 94.4
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 1.1e-27 126.7 71 94.4
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 1.1e-27 126.7 71 94.4
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 1.1e-27 126.7 71 94.4
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 1.1e-27 126.7 71 94.4
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 3.2e-27 125.2 71 93.0
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 5.5e-27 124.4 71 93.0
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 9.4e-27 123.6 71 91.5
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 1.6e-26 122.9 71 91.5
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 2.1e-26 122.5 71 90.1
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 1.4e-25 119.8 71 88.7
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 1.8e-25 119.4 71 87.3
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 1.8e-25 119.4 71 87.3
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 2.3e-25 119.0 92 76.1
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 3.3e-24 115.2 72 88.9
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 3.3e-24 115.2 90 73.3
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 5.7e-24 114.4 73 83.6
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 9.7e-24 113.6 75 84.0
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 1.3e-23 113.2 80 77.5
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.2e-23 112.5 75 82.7
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 2.8e-23 112.1 75 82.7
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 2.8e-23 112.1 75 82.7
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 2.8e-23 112.1 75 82.7
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 3.7e-23 111.7 75 82.7
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 3.7e-23 111.7 75 82.7
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 3.7e-23 111.7 75 82.7
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 4.8e-23 111.3 71 87.3
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 4.8e-23 111.3 75 81.3
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 4.8e-23 111.3 74 85.1
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 6.3e-23 110.9 75 82.7
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 6.3e-23 110.9 75 81.3
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 8.2e-23 110.5 75 81.3
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 8.2e-23 110.5 75 81.3
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 1.1e-22 110.2 75 80.0
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 1.1e-22 110.2 75 80.0
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 1.1e-22 110.2 72 84.7
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 1.1e-22 110.2 75 82.7
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 1.1e-22 110.2 67 89.6
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.8e-22 109.4 75 81.3
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 2.4e-22 109.0 75 81.3
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 2.4e-22 109.0 71 85.9
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 2.4e-22 109.0 75 81.3
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 3.1e-22 108.6 75 81.3
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 3.1e-22 108.6 75 81.3
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 3.1e-22 108.6 75 81.3
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 3.1e-22 108.6 71 83.1
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 3.1e-22 108.6 75 81.3
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 4.1e-22 108.2 72 81.9
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 4.1e-22 108.2 73 79.5
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 5.3e-22 107.8 72 83.3
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 5.3e-22 107.8 72 83.3
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 5.3e-22 107.8 72 83.3
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 5.3e-22 107.8 75 81.3
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 7.0e-22 107.5 73 80.8
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 7.0e-22 107.5 75 80.0
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 1.2e-21 106.7 72 81.9
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 1.6e-21 106.3 72 81.9
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 1.6e-21 106.3 73 82.2
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 2.6e-21 105.5 70 81.4
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 1.0e-20 103.6 73 82.2
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 1.3e-20 103.2 72 80.6
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 5.0e-20 101.3 70 78.6
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 5.0e-20 101.3 70 80.0
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 5.0e-20 101.3 71 80.3
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 6.5e-20 100.9 70 77.1
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 1.1e-19 100.1 80 71.2
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 1.5e-19 99.8 68 82.4
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 2.5e-19 99.0 75 76.0
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 2.5e-19 99.0 75 76.0
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 3.2e-19 98.6 74 75.7
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 3.2e-19 98.6 73 71.2
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 4.2e-19 98.2 61 85.2
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 4.2e-19 98.2 61 85.2
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 4.2e-19 98.2 61 85.2
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 4.2e-19 98.2 63 84.1
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 7.2e-19 97.4 60 86.7
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 7.2e-19 97.4 82 68.3
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 9.4e-19 97.1 83 67.5
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 9.4e-19 97.1 64 79.7
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 1.2e-18 96.7 73 74.0
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 2.1e-18 95.9 67 76.1
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 2.1e-18 95.9 67 76.1
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.7e-18 95.5 67 80.6
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 3.6e-18 95.1 73 75.3
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 6.1e-18 94.4 63 79.4
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 1.0e-17 93.6 60 80.0
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 1.4e-17 93.2 83 63.9
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 1.4e-17 93.2 60 85.0
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 1.8e-17 92.8 84 63.1
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 3.0e-17 92.0 60 81.7
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 3.0e-17 92.0 70 68.6
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 3.0e-17 92.0 53 90.6
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 3.0e-17 92.0 53 90.6
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 4.0e-17 91.7 70 70.0
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 5.2e-17 91.3 80 66.2
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 6.7e-17 90.9 73 68.5
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 6.7e-17 90.9 57 86.0
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 8.8e-17 90.5 73 72.6
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 1.2e-16 90.1 65 72.3
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.2e-16 90.1 73 71.2
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.2e-16 90.1 73 71.2
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 2.0e-16 89.4 70 65.7
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 2.0e-16 89.4 70 65.7
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.6e-16 89.0 75 68.0
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 2.6e-16 89.0 88 56.8
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 3.3e-16 88.6 64 75.0
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 5.7e-16 87.8 70 70.0
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 9.7e-16 87.0 60 76.7
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 3.7e-15 85.1 60 76.7
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 4.8e-15 84.7 77 63.6
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 6.3e-15 84.3 71 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 1.4e-14 83.2 62 71.0
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 1.8e-14 82.8 61 68.9
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 2.4e-14 82.4 48 87.5
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 4.1e-14 81.6 71 66.2
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 7.0e-14 80.9 58 70.7
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 7.0e-14 80.9 58 70.7
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 9.1e-14 80.5 74 63.5
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 9.1e-14 80.5 58 69.0
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 1.2e-13 80.1 54 75.9
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 3.8e-12 75.1 71 50.7
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 1.9e-11 72.8 63 65.1
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.4e-09 66.6 85 50.6
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 3.7e-07 58.5 40 70.0


User provided reference genes

Program Settings