Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 2.2e-48 195.3 95 100.0
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 2.9e-45 184.9 92 95.7
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 9.1e-39 163.3 90 85.6
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.5e-38 162.5 88 86.4
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 3.2e-36 154.8 92 79.3
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 3.2e-36 154.8 98 77.6
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 4.2e-36 154.5 98 76.5
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.4e-34 149.4 89 75.3
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 3.9e-34 147.9 88 75.0
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.0e-33 145.6 93 68.8
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 2.0e-33 145.6 88 78.4
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 1.3e-32 142.9 99 71.7
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.7e-32 142.5 93 71.0
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.2e-32 142.1 88 72.7
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.8e-32 141.7 87 70.1
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 3.7e-32 141.4 87 71.3
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 8.2e-32 140.2 94 68.1
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.1e-31 139.8 93 67.7
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 1.8e-31 139.0 93 69.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 4.1e-31 137.9 94 72.3
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 5.3e-31 137.5 91 69.2
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 7.0e-31 137.1 94 64.9
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 7.0e-31 137.1 84 76.2
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.2e-30 136.3 87 70.1
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.6e-30 135.2 96 64.6
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 3.5e-30 134.8 93 67.7
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.5e-30 134.8 77 76.6
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.5e-30 134.8 95 69.5
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 4.5e-30 134.4 92 68.5
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 4.5e-30 134.4 90 65.6
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 4.5e-30 134.4 95 68.4
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.5e-30 134.4 95 69.5
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 5.9e-30 134.0 93 71.0
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 7.7e-30 133.7 95 67.4
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.0e-29 133.3 90 67.8
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.0e-29 133.3 77 76.6
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.0e-29 133.3 77 76.6
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.0e-29 133.3 79 73.4
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.3e-29 132.9 87 69.0
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 1.7e-29 132.5 88 67.0
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 2.2e-29 132.1 88 70.5
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.9e-29 131.7 87 67.8
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 2.9e-29 131.7 84 71.4
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.9e-29 131.7 89 74.2
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 3.8e-29 131.3 76 75.0
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.8e-29 131.3 95 66.3
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.8e-29 131.3 87 67.8
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 5.0e-29 131.0 87 67.8
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 5.0e-29 131.0 84 72.6
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 5.0e-29 131.0 83 72.3
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 5.0e-29 131.0 83 72.3
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 6.5e-29 130.6 81 71.6
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 6.5e-29 130.6 87 67.8
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 6.5e-29 130.6 87 66.7
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 1.5e-28 129.4 87 70.1
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.5e-28 128.6 90 66.7
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.5e-28 128.6 87 69.0
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 2.5e-28 128.6 86 67.4
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.5e-28 128.6 87 66.7
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 3.2e-28 128.3 95 65.3
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 4.2e-28 127.9 86 69.8
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 7.2e-28 127.1 95 66.3
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 9.4e-28 126.7 88 63.6
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.6e-27 125.9 88 64.8
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.6e-27 125.9 88 64.8
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 2.1e-27 125.6 94 63.8
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.1e-27 125.6 90 66.7
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 3.6e-27 124.8 87 69.0
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 4.7e-27 124.4 94 62.8
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 6.1e-27 124.0 86 66.3
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 8.0e-27 123.6 90 68.9
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 8.0e-27 123.6 85 71.8
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 8.0e-27 123.6 83 66.3
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 1.0e-26 123.2 93 60.2
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.4e-26 122.9 88 64.8
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.8e-26 122.5 83 63.9
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.3e-26 122.1 88 67.0
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.0e-26 121.7 87 64.4
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 4.0e-26 121.3 79 73.4
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 8.8e-26 120.2 92 62.0
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.2e-25 119.8 100 57.0
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 1.2e-25 119.8 75 76.0
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 1.2e-25 119.8 81 71.6
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.5e-25 119.4 80 67.5
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.5e-25 119.4 80 67.5
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.5e-25 119.4 75 72.0
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.5e-25 119.4 80 65.0
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 2.0e-25 119.0 81 65.4
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 2.0e-25 119.0 83 66.3
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 2.6e-25 118.6 89 61.8
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 3.3e-25 118.2 88 65.9
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 3.3e-25 118.2 87 63.2
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 3.3e-25 118.2 85 65.9
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.3e-25 118.2 76 68.4
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 3.3e-25 118.2 88 63.6
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 4.4e-25 117.9 92 62.0
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 5.7e-25 117.5 92 59.8
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 5.7e-25 117.5 76 68.4
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.7e-24 115.9 90 60.0
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 2.2e-24 115.5 102 56.9
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.2e-24 115.5 79 65.8
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.8e-24 115.2 85 64.7
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 2.8e-24 115.2 79 65.8
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 2.8e-24 115.2 90 61.1
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 3.7e-24 114.8 93 57.0
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 1.4e-23 112.8 82 64.6
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.8e-23 112.5 84 63.1
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 2.4e-23 112.1 90 57.8
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 3.1e-23 111.7 90 58.9
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 7.0e-23 110.5 74 68.9
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 9.1e-23 110.2 80 65.0
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-22 109.8 62 77.4
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.2e-22 109.8 62 77.4
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 2.0e-22 109.0 62 77.4
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 2.0e-22 109.0 62 77.4
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.0e-22 109.0 75 69.3
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.0e-22 109.0 99 54.5
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.0e-22 109.0 99 54.5
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 2.0e-22 109.0 73 69.9
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 2.7e-22 108.6 86 60.5
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 2.7e-22 108.6 92 53.3
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 3.5e-22 108.2 92 54.3
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 3.5e-22 108.2 92 54.3
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 7.7e-22 107.1 71 69.0
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.3e-21 106.3 80 60.0
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.7e-21 105.9 87 59.8
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.2e-21 105.5 71 67.6
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 2.9e-21 105.1 80 62.5
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 8.5e-21 103.6 81 56.8
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.5e-20 102.8 66 69.7
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.6e-19 98.2 73 58.9
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 4.7e-19 97.8 74 62.2
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.0e-18 96.7 77 59.7
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.0e-18 96.7 77 59.7
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.0e-18 96.7 98 51.0
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 3.0e-18 95.1 80 51.2
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 2.0e-17 92.4 75 54.7
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.4e-17 91.3 65 63.1
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.7e-16 89.4 74 55.4
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.8e-16 87.8 67 59.7
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 8.3e-16 87.0 62 61.3
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 8.3e-16 87.0 62 67.7
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.1e-15 86.7 76 56.6
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.8e-15 85.9 56 66.1
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.1e-15 85.1 56 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 9.1e-15 83.6 74 54.1
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 9.1e-15 83.6 65 58.5
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-14 83.2 106 44.3
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.2e-14 83.2 56 67.9
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 4.5e-14 81.3 61 62.3
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.5e-12 75.5 50 70.0
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.2e-11 73.2 44 70.5
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 8.0e-11 70.5 63 44.4
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.0e-10 70.1 42 71.4
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 5.2e-10 67.8 57 54.4
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 1.1e-07 60.1 44 65.9
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 5.4e-07 57.8 46 54.3
Cre12.g515150 Chlamydomonas reinhardtii HOM05D004571 ORTHO05D005334 7.8e-06 53.9 67 40.3


User provided reference genes

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