Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 7.2e-306 1053.1 545 100.0
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 3.7e-270 934.5 553 89.5
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 4.7e-241 837.8 574 79.3
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 9.9e-239 830.1 575 79.3
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 9.0e-224 780.4 538 77.5
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 7.6e-223 777.3 542 76.6
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 7.1e-221 770.8 598 72.4
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 9.6e-218 760.4 590 70.3
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.5e-207 726.5 584 69.0
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 6.5e-206 721.1 549 71.4
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.6e-204 716.5 516 72.5
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 4.6e-204 714.9 575 68.7
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 7.9e-204 714.1 527 71.5
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 1.0e-203 713.8 560 71.2
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 3.9e-203 711.8 410 85.4
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 8.7e-203 710.7 565 68.1
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.5e-202 709.9 428 81.8
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.5e-202 709.9 439 82.0
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.5e-202 709.1 508 72.8
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 2.2e-201 706.1 617 64.7
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.8e-201 705.7 500 73.4
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 3.7e-201 705.3 437 80.3
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 8.2e-201 704.1 524 72.1
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.1e-200 703.7 566 69.1
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 9.1e-200 700.7 413 83.3
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 3.4e-199 698.7 587 67.6
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 1.0e-198 697.2 412 84.2
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 2.2e-198 696.0 545 69.2
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 5.0e-198 694.9 543 70.3
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.5e-198 694.5 531 69.1
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.1e-197 693.7 601 64.4
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.9e-197 693.0 411 83.0
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 3.2e-197 692.2 596 65.3
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 3.6e-196 688.7 423 80.9
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 3.0e-195 685.6 427 79.6
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 5.1e-195 684.9 538 67.1
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 2.0e-194 682.9 535 68.4
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 2.6e-194 682.6 452 76.8
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.3e-193 680.2 568 66.4
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 3.7e-193 678.7 427 77.5
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 4.8e-193 678.3 518 67.8
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 8.2e-193 677.6 602 63.6
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 8.2e-193 677.6 521 69.3
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 8.2e-193 677.6 423 80.6
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.1e-192 677.2 537 67.8
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 1.4e-192 676.8 570 65.6
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.4e-192 676.0 544 66.0
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 3.1e-192 675.6 469 73.8
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 5.3e-192 674.9 558 67.2
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 9.1e-192 674.1 600 63.3
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 2.6e-191 672.5 473 73.8
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 5.9e-191 671.4 576 64.6
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.0e-190 670.6 412 81.3
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.3e-190 670.2 425 78.6
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.7e-190 669.8 596 63.9
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.7e-190 669.8 438 76.9
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.7e-190 669.8 453 75.3
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 2.2e-190 669.5 411 80.3
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 2.2e-190 669.5 594 64.1
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 2.9e-190 669.1 577 64.3
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 6.5e-190 667.9 452 74.8
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 6.5e-190 667.9 449 75.1
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 3.2e-189 665.6 577 63.6
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.2e-188 663.7 588 63.3
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.6e-188 663.3 567 64.7
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 3.6e-188 662.1 562 64.6
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 4.7e-188 661.8 536 65.7
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 8.0e-188 661.0 588 62.6
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.0e-187 660.6 440 74.8
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 1.0e-187 660.6 555 65.9
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 1.0e-187 660.6 589 63.3
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.8e-187 659.8 440 74.5
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 2.3e-187 659.4 601 61.6
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 3.0e-187 659.1 441 76.2
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 3.0e-187 659.1 517 67.7
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 5.2e-187 658.3 576 63.5
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 6.7e-187 657.9 464 72.2
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 6.7e-187 657.9 427 77.8
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 1.1e-186 657.1 441 75.5
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.1e-186 657.1 601 61.4
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 1.5e-186 656.8 584 62.8
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.0e-186 656.4 419 78.0
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.0e-186 656.4 408 79.7
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.0e-186 656.4 408 79.7
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 2.6e-186 656.0 459 73.2
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.3e-186 655.6 600 61.5
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.4e-186 655.2 618 60.5
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.4e-186 655.2 437 75.5
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.4e-186 655.2 427 76.1
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.4e-186 654.4 593 61.6
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 1.1e-184 650.6 576 62.5
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 1.4e-184 650.2 396 80.8
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.8e-184 649.8 569 62.4
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 2.4e-184 649.4 459 72.8
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 2.4e-184 649.4 459 72.8
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 3.1e-184 649.0 464 71.3
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.6e-183 646.7 404 79.5
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 3.5e-183 645.6 529 65.0
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 7.7e-183 644.4 529 65.0
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 7.7e-183 644.4 434 74.0
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 1.0e-182 644.0 426 76.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.2e-182 642.9 556 62.6
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.9e-182 642.5 429 75.3
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 2.9e-182 642.5 425 75.1
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 5.0e-182 641.7 529 64.8
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 5.0e-182 641.7 540 64.1
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 5.0e-182 641.7 529 64.7
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.1e-181 640.6 405 76.5
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.2e-181 638.6 499 69.7
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 4.2e-181 638.6 546 64.3
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 7.2e-181 637.9 437 72.5
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 1.2e-180 637.1 515 66.4
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 1.6e-180 636.7 420 75.2
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 2.1e-180 636.3 559 62.6
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 4.7e-180 635.2 549 61.9
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.4e-179 633.6 556 62.8
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.8e-179 633.3 429 74.8
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.8e-179 633.3 530 63.6
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 4.0e-179 632.1 415 75.9
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 4.0e-179 632.1 410 78.8
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 4.0e-179 632.1 568 61.1
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 6.7e-179 631.3 557 62.8
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 6.7e-179 631.3 557 62.8
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 6.7e-179 631.3 557 62.8
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 4.4e-178 628.6 583 60.5
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 4.4e-178 628.6 557 61.4
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 2.2e-174 616.3 578 60.9
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 5.5e-173 611.7 488 64.3
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 7.2e-173 611.3 415 73.5
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 1.6e-172 610.1 402 75.6
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.8e-168 596.7 536 63.2
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 2.4e-168 596.3 573 57.1
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.5e-165 587.0 360 80.6
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 5.2e-163 578.6 401 71.3
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 6.1e-156 555.1 354 79.4
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.4e-147 527.3 571 56.0
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 4.0e-147 525.8 354 71.8
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.6e-146 523.1 419 64.2
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 3.4e-146 522.7 445 62.2
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.2e-143 514.2 422 62.3
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.2e-137 493.4 376 69.7
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 2.1e-135 486.9 299 76.6
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 8.9e-131 471.5 372 65.1
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 4.0e-99 366.3 209 82.8
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 4.3e-93 346.3 197 82.7
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 3.1e-91 340.1 388 47.7
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 1.2e-82 311.6 180 81.1
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 6.1e-79 299.3 383 50.7
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.0e-77 294.3 159 86.2
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.7e-77 292.0 156 87.2
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.7e-77 292.0 156 87.2
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 2.4e-75 287.3 243 60.9
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.5e-66 256.5 382 41.4
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.4e-62 245.0 361 38.0
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.3e-54 217.6 163 69.9
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 9.1e-51 205.7 305 38.0
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 6.1e-47 193.0 127 79.5
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.0e-46 192.2 263 39.2
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 1.3e-44 185.3 184 54.9
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 2.0e-42 177.9 109 78.9
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 2.4e-35 154.5 152 55.9
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.7e-34 151.0 110 65.5
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.0e-33 146.7 88 76.1
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 8.6e-33 146.0 124 59.7
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 3.3e-32 144.1 217 35.5
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 5.6e-32 143.3 99 73.7
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 8.0e-31 139.4 83 75.9
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.5e-29 135.2 83 73.5
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 8.1e-23 112.8 94 60.6
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 3.1e-22 110.9 114 51.8
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.9e-19 101.7 163 40.5
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.5e-13 82.0 175 33.7
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 2.6e-13 81.3 50 84.0
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 7.1e-11 73.2 111 42.3
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 6.6e-09 66.6 59 64.4
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 4.3e-08 63.9 215 33.0
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 6.2e-07 60.1 32 81.2


User provided reference genes

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