Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.5e-80 302.8 152 100.0
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 9.9e-80 300.1 152 99.3
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.3e-76 289.7 151 95.4
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 8.7e-68 260.4 151 86.8
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 4.8e-66 254.6 151 82.1
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.4e-65 253.1 149 81.9
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 6.9e-65 250.8 151 81.5
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 7.6e-64 247.3 149 82.6
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 6.5e-63 244.2 151 78.8
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 5.5e-62 241.1 149 79.9
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-61 240.0 151 76.8
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 2.1e-61 239.2 149 75.8
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.9e-54 216.1 148 70.3
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 5.5e-54 214.5 148 69.6
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.2e-53 213.4 149 67.8
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 1.2e-53 213.4 149 68.5
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.6e-53 213.0 148 68.9
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 7.9e-53 210.7 149 65.1
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.0e-52 210.3 147 67.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.0e-52 210.3 147 67.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.0e-52 210.3 147 67.3
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 3.9e-52 208.4 149 67.1
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 3.9e-52 208.4 147 66.7
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 6.7e-52 207.6 148 66.2
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.1e-51 206.8 151 69.5
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 4.4e-51 204.9 149 65.1
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.4e-51 204.9 146 66.4
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 4.4e-51 204.9 149 66.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 7.4e-51 204.1 133 78.9
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 7.4e-51 204.1 133 78.9
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 7.4e-51 204.1 147 63.9
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 9.7e-51 203.8 149 66.4
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.3e-50 203.4 149 63.1
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.7e-50 203.0 149 66.4
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 2.2e-50 202.6 149 66.4
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.8e-50 202.2 149 61.7
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 2.8e-50 202.2 149 65.1
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.8e-50 201.4 149 61.7
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 4.8e-50 201.4 148 63.5
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.3e-50 201.1 149 62.4
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 6.3e-50 201.1 150 62.7
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 2.4e-49 199.1 149 61.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.4e-49 199.1 149 61.1
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 2.4e-49 199.1 152 63.2
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.4e-49 199.1 149 61.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.1e-49 198.4 149 61.1
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.1e-49 198.4 149 60.4
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 4.1e-49 198.4 149 63.1
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 4.1e-49 198.4 152 63.2
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 5.3e-49 198.0 149 60.4
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 5.3e-49 198.0 149 60.4
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.3e-49 198.0 149 61.1
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 6.9e-49 197.6 149 64.4
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 6.9e-49 197.6 151 66.9
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 6.9e-49 197.6 149 60.4
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 6.9e-49 197.6 149 64.4
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.9e-49 197.6 147 61.9
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-48 196.8 149 60.4
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.5e-48 196.4 149 63.8
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.5e-48 196.4 149 63.8
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.0e-48 196.1 149 59.7
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 2.0e-48 196.1 151 61.6
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 2.6e-48 195.7 149 63.8
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.4e-48 195.3 149 59.7
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 4.5e-48 194.9 149 63.1
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.5e-48 194.9 149 60.4
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 5.9e-48 194.5 149 62.4
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.7e-47 193.0 149 62.4
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 2.9e-47 192.2 156 58.3
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.9e-47 192.2 149 61.7
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.9e-47 192.2 145 62.8
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 2.9e-47 192.2 149 61.1
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.9e-47 192.2 148 62.2
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.9e-47 192.2 148 60.1
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.9e-47 192.2 149 61.1
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.8e-47 191.8 150 57.3
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 5.0e-47 191.4 149 61.1
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 6.5e-47 191.0 150 59.3
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 8.5e-47 190.7 149 61.7
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 1.1e-46 190.3 149 62.4
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.9e-46 189.5 160 56.2
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.9e-46 189.5 159 56.6
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.9e-46 189.5 153 60.8
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.9e-46 189.5 147 62.6
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 3.2e-46 188.7 161 55.9
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 3.2e-46 188.7 149 57.7
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 5.5e-46 188.0 148 60.8
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 7.2e-46 187.6 149 60.4
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 9.4e-46 187.2 149 59.1
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 9.4e-46 187.2 149 57.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 9.4e-46 187.2 148 60.1
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.2e-45 186.8 133 63.9
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.2e-45 186.8 181 54.1
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.6e-45 186.4 147 59.2
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 2.7e-45 185.7 149 60.4
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 4.7e-45 184.9 149 60.4
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.0e-44 183.7 149 61.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 3.0e-44 182.2 144 61.8
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 3.9e-44 181.8 150 56.7
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 5.2e-44 181.4 149 58.4
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 6.7e-44 181.0 149 57.0
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 8.8e-44 180.6 142 59.9
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.8e-44 180.6 142 59.9
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.8e-44 180.6 142 59.9
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 8.8e-44 180.6 143 59.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.0e-43 179.5 147 59.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.0e-43 179.5 144 59.0
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.0e-43 179.5 144 59.0
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.0e-43 179.5 142 59.2
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.6e-43 179.1 142 59.2
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 2.6e-43 179.1 149 57.7
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 2.6e-43 179.1 149 57.0
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 5.7e-43 177.9 141 58.9
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 5.7e-43 177.9 160 55.0
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 7.4e-43 177.6 148 56.1
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 7.4e-43 177.6 151 56.3
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.7e-42 175.3 142 54.9
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 3.7e-42 175.3 149 55.0
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 8.2e-42 174.1 142 56.3
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.1e-41 173.7 142 54.9
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.1e-41 173.7 148 56.1
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.4e-41 173.3 169 53.8
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.2e-40 170.2 142 53.5
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 5.9e-40 167.9 148 60.8
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.7e-39 166.4 140 55.0
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 2.2e-39 166.0 142 52.8
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 2.9e-39 165.6 142 52.1
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 2.9e-39 165.6 142 52.1
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 2.9e-39 165.6 142 52.1
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 3.8e-39 165.2 149 50.3
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 3.8e-39 165.2 149 50.3
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 5.0e-39 164.9 142 52.8
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 8.5e-39 164.1 153 56.9
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.9e-38 162.9 221 41.6
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.5e-38 162.5 145 51.0
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 3.2e-38 162.2 192 46.9
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 9.4e-38 160.6 147 53.1
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.2e-37 160.2 140 54.3
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 3.6e-37 158.7 140 53.6
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.0e-36 157.1 151 57.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.8e-36 156.4 153 55.6
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 6.7e-36 154.5 148 51.4
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 4.8e-34 148.3 150 50.7
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 9.1e-33 144.1 149 49.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 4.5e-32 141.7 107 59.8
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.7e-31 139.8 147 51.0
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.9e-30 136.3 80 82.5
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.2e-29 133.7 105 58.1
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.2e-29 133.7 105 58.1
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.4e-28 130.2 132 51.5
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.8e-28 129.8 105 56.2
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.7e-26 122.1 89 60.7
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.1e-25 120.6 99 55.6
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.1e-25 120.6 89 61.8
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 3.1e-25 119.0 153 46.4
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 5.9e-24 114.8 138 43.5
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.3e-23 113.6 89 57.3
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.3e-23 113.6 89 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 2.0e-19 99.8 137 35.0
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 2.6e-19 99.4 74 66.2
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 2.8e-18 95.9 86 47.7
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 4.9e-18 95.1 85 58.8
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.4e-17 92.8 103 40.8
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 3.1e-17 92.4 91 47.3
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.6e-15 84.7 139 27.3
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.6e-13 79.0 104 35.6
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.0e-12 77.4 84 48.8
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.0e-12 77.4 142 26.8
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.8e-12 76.6 102 40.2
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 1.5e-11 73.6 140 28.6
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 3.4e-11 72.4 46 67.4
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 5.4e-09 65.1 140 27.9
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.6e-08 62.0 39 61.5
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 3.3e-06 55.8 134 26.1


User provided reference genes

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