Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 3.7e-71 271.6 147 100.0
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 4.8e-71 271.2 147 99.3
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.8e-70 269.2 147 98.6
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 7.6e-69 263.8 147 95.9
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 2.9e-68 261.9 145 95.9
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 8.7e-65 250.4 140 96.4
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 4.3e-64 248.1 146 91.1
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 9.7e-64 246.9 146 90.4
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 8.2e-63 243.8 146 89.0
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.1e-62 243.4 146 89.0
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 3.1e-62 241.9 146 89.7
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 3.1e-62 241.9 146 89.7
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 2.0e-61 239.2 146 89.0
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 7.6e-61 237.3 140 90.0
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.0e-60 236.9 147 85.0
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 3.8e-60 235.0 142 89.4
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 5.0e-60 234.6 145 84.1
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 5.0e-60 234.6 148 84.5
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 5.0e-60 234.6 148 84.5
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.1e-59 233.4 142 86.6
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 147 84.4
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 147 84.4
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.9e-59 232.6 147 84.4
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 1.9e-59 232.6 139 87.1
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 3.2e-59 231.9 144 84.0
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 3.2e-59 231.9 144 84.7
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 4.2e-59 231.5 145 84.8
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 4.2e-59 231.5 145 84.8
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 7.2e-59 230.7 148 85.8
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 9.4e-59 230.3 140 86.4
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.2e-58 229.9 146 82.9
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.6e-58 229.6 149 84.6
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.1e-58 229.2 146 84.2
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 2.7e-58 228.8 147 83.7
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 2.7e-58 228.8 147 83.0
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.6e-58 228.4 146 83.6
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 4.6e-58 228.0 139 86.3
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 4.6e-58 228.0 145 83.4
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 6.1e-58 227.6 147 81.0
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 6.1e-58 227.6 140 85.7
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 6.1e-58 227.6 140 85.7
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 6.1e-58 227.6 141 84.4
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 7.9e-58 227.3 142 84.5
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 7.9e-58 227.3 144 82.6
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.0e-57 226.9 139 85.6
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.0e-57 226.9 139 87.1
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.4e-57 226.5 148 80.4
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.4e-57 226.5 144 84.0
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.4e-57 226.5 140 87.1
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.4e-57 226.5 139 84.2
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.8e-57 226.1 147 84.4
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 2.3e-57 225.7 139 86.3
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 2.3e-57 225.7 139 86.3
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 2.3e-57 225.7 141 85.8
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.3e-57 225.7 140 85.0
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 3.0e-57 225.3 139 84.2
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 3.9e-57 224.9 145 84.8
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 3.9e-57 224.9 148 81.1
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 5.1e-57 224.6 140 82.9
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 5.1e-57 224.6 144 81.9
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.1e-56 223.4 144 83.3
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 1.9e-56 222.6 140 84.3
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 2.5e-56 222.2 146 82.9
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 3.3e-56 221.9 140 84.3
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.3e-56 221.9 140 84.3
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.3e-56 221.9 140 83.6
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 3.3e-56 221.9 141 83.0
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 3.3e-56 221.9 140 81.4
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 4.3e-56 221.5 139 81.3
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 5.7e-56 221.1 139 85.6
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 7.4e-56 220.7 139 85.6
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 7.4e-56 220.7 143 79.7
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 7.4e-56 220.7 144 80.6
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 7.4e-56 220.7 139 83.5
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 9.7e-56 220.3 140 82.1
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 9.7e-56 220.3 136 83.1
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.3e-55 219.9 139 85.6
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 134 85.1
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.7e-55 219.5 140 82.9
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.7e-55 219.5 140 82.9
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.7e-55 219.5 140 82.9
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 3.7e-55 218.4 139 83.5
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.8e-55 218.0 139 81.3
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.8e-55 218.0 139 81.3
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 4.8e-55 218.0 148 78.4
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.1e-54 216.9 141 80.1
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.4e-54 216.5 143 80.4
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.4e-54 216.5 137 83.2
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 4.1e-54 214.9 137 83.9
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 9.1e-54 213.8 139 80.6
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 9.1e-54 213.8 139 80.6
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 1.5e-53 213.0 143 78.3
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 3.4e-53 211.8 141 78.7
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 3.4e-53 211.8 135 81.5
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 3.4e-53 211.8 137 77.4
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 4.5e-53 211.5 141 78.7
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 2.9e-52 208.8 136 80.1
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 5.0e-52 208.0 143 77.6
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.4e-51 206.5 144 77.1
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 9.4e-51 203.8 144 75.7
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 1.2e-50 203.4 135 77.0
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.2e-50 203.4 135 77.0
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 1.2e-50 203.4 137 76.6
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 3.6e-50 201.8 140 76.4
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 6.1e-50 201.1 125 87.2
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 5.1e-49 198.0 149 73.8
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 8.8e-49 197.2 142 76.1
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 2.0e-48 196.1 135 75.6
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 3.3e-48 195.3 142 73.9
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.3e-47 193.4 140 72.1
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 2.2e-47 192.6 140 72.1
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 6.3e-47 191.0 145 67.6
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 6.3e-47 191.0 139 74.1
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 6.3e-47 191.0 139 74.1
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 6.3e-47 191.0 140 71.4
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 6.3e-47 191.0 139 74.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 1.1e-46 190.3 142 73.2
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 143 72.7
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 2.4e-46 189.1 136 72.8
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 3.1e-46 188.7 142 72.5
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 3.1e-46 188.7 139 71.9
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 4.1e-46 188.3 134 73.9
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 5.3e-46 188.0 138 69.6
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 1.0e-44 183.7 142 72.5
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.3e-44 183.3 142 72.5
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 8.5e-44 180.6 147 70.7
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 8.5e-44 180.6 147 70.7
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 4.2e-43 178.3 116 78.4
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 9.4e-43 177.2 118 80.5
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 8.0e-42 174.1 135 68.9
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.3e-41 172.6 147 62.6
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 6.7e-41 171.0 142 63.4
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.1e-40 170.2 142 66.9
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 1.1e-38 163.7 144 63.9
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 4.2e-35 151.8 142 57.7
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 5.5e-35 151.4 132 63.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 6.7e-33 144.4 130 62.3
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.3e-31 140.2 130 56.9
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.1e-27 127.1 140 55.0
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.6e-24 115.9 109 61.5
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 2.8e-23 112.5 104 62.5
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.8e-23 111.7 80 76.2
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 8.6e-20 100.9 131 42.0
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 4.2e-19 98.6 138 39.9
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 4.1e-14 82.0 87 50.6
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 7.0e-14 81.3 49 81.6


User provided reference genes

Program Settings