Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 6.3e-205 717.2 368 100.0
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 3.1e-196 688.3 368 96.2
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.4e-191 672.9 368 94.3
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 1.8e-191 672.5 368 93.8
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 9.2e-180 633.6 366 88.5
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 8.9e-175 617.1 368 87.2
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 9.8e-174 613.6 362 87.3
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 3.1e-167 592.0 404 78.2
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 6.8e-167 590.9 342 87.4
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 1.6e-163 579.7 377 79.6
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 9.2e-156 553.9 363 78.8
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 4.0e-151 538.5 381 74.8
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 4.4e-150 535.0 403 70.7
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 1.9e-148 529.6 359 74.9
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 1.2e-147 526.9 363 72.7
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 2.3e-146 522.7 359 74.4
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 2.3e-146 522.7 413 67.6
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.0e-146 522.3 365 72.9
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 6.6e-146 521.2 365 72.6
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 6.6e-146 521.2 365 72.6
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 1.1e-145 520.4 362 72.4
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 1.3e-144 516.9 362 73.8
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 2.1e-144 516.2 309 86.1
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 4.8e-144 515.0 359 73.8
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 6.2e-144 514.6 362 74.3
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 1.8e-143 513.1 362 74.3
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 4.0e-143 511.9 364 72.0
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 2.6e-142 509.2 363 71.6
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.2e-141 506.1 362 72.9
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 3.8e-141 505.4 380 70.5
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.1e-140 503.8 395 69.4
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 9.3e-140 500.7 357 70.9
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 1.6e-139 500.0 350 74.6
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 6.0e-139 498.0 359 70.8
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 7.9e-139 497.7 455 60.0
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 1.3e-138 496.9 355 71.8
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 3.0e-138 495.7 358 69.8
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 5.1e-138 495.0 342 74.0
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 8.7e-138 494.2 359 70.2
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 2.8e-136 489.2 358 69.3
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 2.8e-136 489.2 362 72.1
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 4.8e-136 488.4 413 63.2
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 4.8e-136 488.4 358 70.4
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 6.2e-136 488.0 364 70.1
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 5.3e-135 485.0 411 63.0
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.2e-134 483.8 355 70.4
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 2.0e-134 483.0 360 69.7
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.6e-134 482.6 367 70.6
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 2.2e-133 479.6 372 67.5
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 3.8e-133 478.8 406 65.0
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 4.2e-132 475.3 410 62.9
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 5.5e-132 474.9 359 68.8
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 9.3e-132 474.2 402 62.4
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.6e-131 473.4 402 62.4
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 6.0e-131 471.5 386 64.8
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 7.9e-131 471.1 375 65.6
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.8e-130 469.9 383 64.2
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 3.0e-130 469.2 416 61.3
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 3.9e-130 468.8 345 69.6
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 1.5e-129 466.8 414 62.3
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 2.5e-129 466.1 405 62.5
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 3.3e-129 465.7 408 63.2
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 9.6e-129 464.2 370 66.8
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 8.2e-128 461.1 403 62.3
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 1.4e-127 460.3 356 66.0
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.8e-127 459.9 361 66.5
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 3.1e-127 459.1 415 60.2
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 6.9e-127 458.0 342 69.9
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 6.9e-127 458.0 339 69.3
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 6.9e-127 458.0 406 61.1
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 9.0e-127 457.6 407 60.9
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 1.2e-126 457.2 416 59.9
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 7.6e-126 454.5 409 61.1
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 1.3e-125 453.8 407 60.9
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.3e-125 453.8 343 68.5
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 1.7e-125 453.4 385 63.4
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 2.9e-125 452.6 414 58.9
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 3.8e-125 452.2 406 60.8
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 3.8e-125 452.2 423 58.4
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 4.9e-125 451.8 444 56.8
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 6.5e-125 451.4 397 61.5
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 8.4e-125 451.1 325 69.8
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 7.9e-123 444.5 401 59.4
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 7.9e-123 444.5 401 59.4
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 9.7e-121 437.6 367 62.9
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 9.7e-121 437.6 371 62.8
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.6e-120 436.8 343 67.1
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 4.8e-120 435.3 363 62.8
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 6.9e-119 431.4 372 60.8
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 2.0e-118 429.9 326 66.6
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 3.4e-118 429.1 360 61.4
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 7.6e-118 427.9 402 59.2
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 8.5e-117 424.5 362 61.9
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.9e-116 423.3 368 62.5
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 5.5e-116 421.8 364 62.1
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 1.2e-115 420.6 357 63.3
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.1e-111 407.5 358 61.5
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.8e-111 406.8 342 64.0
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 1.8e-111 406.8 355 61.1
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.1e-111 406.0 342 63.7
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.3e-111 405.2 342 63.7
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.4e-110 402.5 342 63.5
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.5e-110 402.1 342 63.5
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 2.9e-109 399.4 372 59.7
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 1.7e-104 383.6 299 66.9
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 1.7e-104 383.6 299 66.9
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.4e-103 379.8 366 56.8
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 2.6e-102 376.3 317 59.0
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 7.2e-100 368.2 363 54.3
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 5.0e-93 345.5 270 66.3
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 1.2e-91 340.9 410 48.5
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 2.9e-85 319.7 318 53.8
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 3.6e-83 312.8 214 74.3
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.7e-80 302.8 365 50.7
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.2e-78 297.7 235 67.2
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 3.0e-74 283.1 217 67.3
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 8.9e-74 281.6 215 69.3
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 2.9e-56 223.4 390 37.2
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 7.0e-55 218.8 153 73.2
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 7.8e-54 215.3 255 48.2
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.8e-51 206.8 149 68.5
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 4.4e-49 199.5 144 72.9
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.7e-48 196.4 128 78.1
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 5.6e-44 182.6 137 63.5
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 9.5e-44 181.8 126 73.8
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.4e-41 172.9 115 75.7
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 3.2e-23 113.6 79 72.2
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.5e-20 104.8 150 44.0
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 1.9e-20 104.4 72 69.4
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 1.6e-14 84.7 56 78.6
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 3.5e-14 83.6 61 73.8
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 5.6e-12 76.3 346 23.4
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 5.6e-12 76.3 72 62.5
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.6e-11 74.7 72 55.6


User provided reference genes

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