Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G310900 Glycine max HOM05D001348 ORTHO05D017988 1.5e-39 165.6 77 100.0
SGA_v2.0_scaffold75G24783 Striga asiatica HOM05D001348 ORTHO05D002788 3.3e-15 84.7 71 54.9
Phvul.001G187600 Phaseolus vulgaris HOM05D001348 ORTHO05D002788 4.3e-15 84.3 64 64.1
Glyma.19G192800 Glycine max HOM05D001348 ORTHO05D002788 7.4e-15 83.6 64 62.5
ClCG10G019210 Citrullus lanatus HOM05D001348 ORTHO05D002788 9.7e-15 83.2 64 62.5
MELO3C009445.2 Cucumis melo HOM05D001348 ORTHO05D002788 9.7e-15 83.2 64 62.5
CsaV3_3G036980 Cucumis sativus L. HOM05D001348 ORTHO05D002788 9.7e-15 83.2 64 62.5
BraA10t45285Z Brassica rapa HOM05D001348 ORTHO05D002788 1.3e-14 82.8 76 53.9
Cfa016560 Carpinus fangiana HOM05D001348 ORTHO05D002788 1.3e-14 82.8 64 60.9
VMungo1383G2218 Vigna mungo HOM05D001348 ORTHO05D002788 1.3e-14 82.8 64 60.9
CiPaw.10G006600 Carya illinoinensis HOM05D001348 ORTHO05D002788 1.6e-14 82.4 64 62.5
Haze_19562 Corylus avellana HOM05D001348 ORTHO05D002788 1.6e-14 82.4 64 60.9
Duzib106G0218 Durio zibethinus HOM05D001348 ORTHO05D002788 1.6e-14 82.4 71 60.6
MD14G1017700 Malus domestica HOM05D001348 ORTHO05D002788 1.6e-14 82.4 78 55.1
Os04g0409200 Oryza sativa ssp. japonica HOM05D001348 ORTHO05D002788 1.6e-14 82.4 64 60.9
Sabra06G0090000 Salix brachista HOM05D001348 ORTHO05D002788 1.6e-14 82.4 62 59.7
THA.LOC104816366 Tarenaya hassleriana HOM05D001348 ORTHO05D002788 1.6e-14 82.4 64 60.9
CARHR130690 Cardamine hirsuta HOM05D001348 ORTHO05D002788 2.2e-14 82.0 64 60.9
Ciclev10011063m.g Citrus clementina HOM05D001348 ORTHO05D002788 2.2e-14 82.0 64 62.5
Dinv31651 Davidia involucrata HOM05D001348 ORTHO05D002788 2.2e-14 82.0 64 60.9
Glyma.03G192300 Glycine max HOM05D001348 ORTHO05D002788 2.2e-14 82.0 69 62.3
Psat3g034640 Pisum sativum HOM05D001348 ORTHO05D002788 2.2e-14 82.0 64 60.9
Thecc.05G083400 Theobroma cacao HOM05D001348 ORTHO05D002788 2.2e-14 82.0 64 60.9
Prupe.7G115400 Prunus persica HOM05D001348 ORTHO05D002788 2.8e-14 81.6 64 60.9
SalBow3G2646 Salvia bowleyana HOM05D001348 ORTHO05D002788 2.8e-14 81.6 64 60.9
Zm00001eb084160 Zea mays HOM05D001348 ORTHO05D002788 2.8e-14 81.6 64 59.4
arahy.Tifrunner.gnm1.ann1.NQP1ZX Arachis hypogaea HOM05D001348 ORTHO05D002788 3.7e-14 81.3 65 58.5
arahy.Tifrunner.gnm1.ann1.ZHBG52 Arachis hypogaea HOM05D001348 ORTHO05D002788 3.7e-14 81.3 64 59.4
CiPaw.09G009900 Carya illinoinensis HOM05D001348 ORTHO05D002788 3.7e-14 81.3 64 60.9
BcaC06g32073 Brassica carinata HOM05D001348 ORTHO05D002788 4.8e-14 80.9 69 60.9
BolC4t22818H Brassica oleracea HOM05D001348 ORTHO05D002788 4.8e-14 80.9 64 59.4
Oeu009904.4 Olea europaea HOM05D001348 ORTHO05D002788 4.8e-14 80.9 64 60.9
Sp6g39090 Schrenkiella parvula HOM05D001348 ORTHO05D002788 4.8e-14 80.9 64 59.4
EL10Ac7g16968 Beta vulgaris HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
BcaB02g09356 Brassica carinata HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
BcaC02g11755 Brassica carinata HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
A10p32450 Brassica napus HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
C04p11690 Brassica napus HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
C09p73270 Brassica napus HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
BolC9t60062H Brassica oleracea HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
BraA05t19897Z Brassica rapa HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
Dinv21240 Davidia involucrata HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
Thhalv10016249m.g Eutrema salsugineum HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 57.8
Lalb_Chr25g0288581 Lupinus albus HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
Nitab4.5_0003541g0040 Nicotiana tabacum HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
Nitab4.5_0004686g0020 Nicotiana tabacum HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 59.4
GSVIVG01033801001 Vitis vinifera HOM05D001348 ORTHO05D002788 6.3e-14 80.5 64 60.9
Duzib093G0823 Durio zibethinus HOM05D001348 ORTHO05D002788 8.2e-14 80.1 64 57.8
ECA238G3493 Erigeron canadensis HOM05D001348 ORTHO05D002788 8.2e-14 80.1 64 60.9
Lsat_1_v5_gn_2_24180 Lactuca sativa HOM05D001348 ORTHO05D002788 8.2e-14 80.1 64 60.9
Ca_08974_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 1.1e-13 79.7 64 59.4
Gohir.A01G207900 Gossypium hirsutum HOM05D001348 ORTHO05D002788 1.1e-13 79.7 64 59.4
Gohir.D01G197300 Gossypium hirsutum HOM05D001348 ORTHO05D002788 1.1e-13 79.7 64 59.4
Gorai.002G241400 Gossypium raimondii HOM05D001348 ORTHO05D002788 1.1e-13 79.7 64 59.4
Lj3A1002T55 Lonicera japonica HOM05D001348 ORTHO05D002788 1.1e-13 79.7 41 85.4
Atru.chr8.1612 Acer truncatum HOM05D001348 ORTHO05D002788 1.4e-13 79.3 41 85.4
A04p27900 Brassica napus HOM05D000103 ORTHO05D000049 1.4e-13 79.3 64 57.8
BraA04t18281Z Brassica rapa HOM05D000103 ORTHO05D000049 1.4e-13 79.3 64 57.8
CSS0016120 Camellia sinensis var. sinensis HOM05D001348 ORTHO05D002788 1.4e-13 79.3 64 60.9
Cpa.g.sc5.62 Carica papaya HOM05D001348 ORTHO05D002788 1.4e-13 79.3 41 85.4
AUR62043105 Chenopodium quinoa HOM05D001348 ORTHO05D002788 1.4e-13 79.3 39 89.7
Cc06_g05400 Coffea canephora HOM05D001348 ORTHO05D002788 1.4e-13 79.3 41 85.4
COL.COLO4_29795 Corchorus olitorius HOM05D001348 ORTHO05D002788 1.4e-13 79.3 64 57.8
HanXRQChr06g0181661 Helianthus annuus HOM05D001348 ORTHO05D002788 1.4e-13 79.3 41 85.4
Medtr7g104080 Medicago truncatula HOM05D001348 ORTHO05D002788 1.4e-13 79.3 41 85.4
Nn6g35010 Nelumbo nucifera HOM05D001348 ORTHO05D002788 1.4e-13 79.3 64 59.4
Zm00001eb242610 Zea mays HOM05D001348 ORTHO05D002788 1.4e-13 79.3 64 59.4
CAN.G824.19 Capsicum annuum HOM05D001348 ORTHO05D002788 1.8e-13 79.0 64 57.8
AUR62033546 Chenopodium quinoa HOM05D001348 ORTHO05D002788 1.8e-13 79.0 41 82.9
Lj1g0001358 Lotus japonicus HOM05D001348 ORTHO05D002788 1.8e-13 79.0 64 59.4
Potri.006G115100 Populus trichocarpa HOM05D001348 ORTHO05D002788 1.8e-13 79.0 41 82.9
Sed0006917 Sechium edule HOM05D001348 ORTHO05D002788 1.8e-13 79.0 64 59.4
SGA_v2.0_scaffold13G06771 Striga asiatica HOM05D001348 ORTHO05D002788 1.8e-13 79.0 64 57.8
THA.LOC104826928 Tarenaya hassleriana HOM05D001348 ORTHO05D002788 1.8e-13 79.0 64 57.8
Aa31LG5G21570 Aethionema arabicum HOM05D001348 ORTHO05D002788 2.4e-13 78.6 41 82.9
MSTRG.19239 Avicennia marina HOM05D001348 ORTHO05D002788 2.4e-13 78.6 64 57.8
MSTRG.5817 Avicennia marina HOM05D001348 ORTHO05D002788 2.4e-13 78.6 64 60.9
CSS0018649 Camellia sinensis var. sinensis HOM05D001348 ORTHO05D002788 2.4e-13 78.6 64 59.4
CANSAT51G0004 Cannabis sativa HOM05D001348 ORTHO05D002788 2.4e-13 78.6 64 57.8
Duzib128G0077 Durio zibethinus HOM05D001348 ORTHO05D002788 2.4e-13 78.6 73 53.4
Manes.09G058676 Manihot esculenta HOM05D001348 ORTHO05D002788 2.4e-13 78.6 64 57.8
Sp4g18680 Schrenkiella parvula HOM05D001348 ORTHO05D002788 2.4e-13 78.6 41 80.5
Actinidia10394 Actinidia chinensis HOM05D001348 ORTHO05D002788 3.1e-13 78.2 64 59.4
Actinidia31282 Actinidia chinensis HOM05D001348 ORTHO05D002788 3.1e-13 78.2 75 52.0
DCAR_009140 Daucus carota HOM05D001348 ORTHO05D002788 3.1e-13 78.2 64 60.9
Manes.08G022400 Manihot esculenta HOM05D001348 ORTHO05D002788 3.1e-13 78.2 64 57.8
AT5G03650 Arabidopsis thaliana HOM05D001348 ORTHO05D002788 4.1e-13 77.8 41 82.9
Carub.0006s0256 Capsella rubella HOM05D001348 ORTHO05D002788 4.1e-13 77.8 41 82.9
CARHR209650 Cardamine hirsuta HOM05D001348 ORTHO05D002788 4.1e-13 77.8 41 82.9
MD12G1020600 Malus domestica HOM05D001348 ORTHO05D002788 4.1e-13 77.8 37 89.2
A05p09380 Brassica napus HOM05D001348 ORTHO05D002788 5.3e-13 77.4 64 57.8
PSO339G5175 Papaver somniferum HOM05D001348 ORTHO05D002788 5.3e-13 77.4 41 82.9
CDE06G0699 Ceratophyllum demersum HOM05D001348 ORTHO05D002788 6.9e-13 77.0 41 82.9
FvH4_6g18120 Fragaria vesca HOM05D001348 ORTHO05D002788 6.9e-13 77.0 41 82.9
FAN02G2109 Fragaria x ananassa HOM05D001348 ORTHO05D002788 6.9e-13 77.0 41 82.9
FAN05G1060 Fragaria x ananassa HOM05D001348 ORTHO05D002788 6.9e-13 77.0 41 82.9
FAN05G5104 Fragaria x ananassa HOM05D001348 ORTHO05D002788 6.9e-13 77.0 41 82.9
FAN09G1654 Fragaria x ananassa HOM05D001348 ORTHO05D002788 6.9e-13 77.0 41 82.9
FAN14G4905 Fragaria x ananassa HOM05D001348 ORTHO05D002788 6.9e-13 77.0 41 82.9
Gohir.A04G065400 Gossypium hirsutum HOM05D001348 ORTHO05D002788 6.9e-13 77.0 64 57.8
Gohir.D04G103000 Gossypium hirsutum HOM05D001348 ORTHO05D002788 6.9e-13 77.0 64 57.8
Gorai.009G406400 Gossypium raimondii HOM05D001348 ORTHO05D002788 6.9e-13 77.0 64 57.8
PSO384G3813 Papaver somniferum HOM05D001348 ORTHO05D002788 6.9e-13 77.0 41 82.9
Aqoxy4G02852 Aquilegia oxysepala HOM05D001348 ORTHO05D002788 9.1e-13 76.6 41 80.5
BcaC02g07601 Brassica carinata HOM05D001348 ORTHO05D002788 9.1e-13 76.6 64 54.7
Thhalv10012679m.g Eutrema salsugineum HOM05D001348 ORTHO05D002788 9.1e-13 76.6 41 80.5
QL07p040002 Quercus lobata HOM05D001348 ORTHO05D002788 9.1e-13 76.6 41 82.9
Rhsim04G0134200 Rhododendron simsii HOM05D001348 ORTHO05D010969 9.1e-13 76.6 37 89.2
RcHm_v2.0_Chr3g0472421 Rosa chinensis HOM05D001348 ORTHO05D002788 9.1e-13 76.6 41 80.5
Sc02g0001080 Simmondsia chinensis HOM05D001348 ORTHO05D002788 9.1e-13 76.6 64 56.2
TAR623G0202 Trochodendron aralioides HOM05D001348 ORTHO05D002788 9.1e-13 76.6 41 80.5
Migut.J00975 Erythranthe guttata HOM05D001348 ORTHO05D002788 1.2e-12 76.3 41 82.9
Lalb_Chr20g0112101 Lupinus albus HOM05D001348 ORTHO05D002788 1.2e-12 76.3 64 56.2
Peaxi162Scf00068g00019 Petunia axillaris HOM05D001348 ORTHO05D002788 1.2e-12 76.3 41 78.0
TPR.G19537 Trifolium pratense HOM05D001348 ORTHO05D002788 1.2e-12 76.3 41 82.9
Carub.0004s1819 Capsella rubella HOM05D001348 ORTHO05D002788 1.5e-12 75.9 64 56.2
Eucgr.A01533 Eucalyptus grandis HOM05D001348 ORTHO05D002788 1.5e-12 75.9 37 83.8
Lj2A132G53 Lonicera japonica HOM05D001348 ORTHO05D002788 1.5e-12 75.9 64 57.8
TWI77G0257 Tripterygium wilfordii HOM05D001348 ORTHO05D002788 1.5e-12 75.9 41 78.0
Ah.08g210820 Amaranthus hybridus HOM05D001348 ORTHO05D002788 2.0e-12 75.5 37 89.2
Gorai.008G141300 Gossypium raimondii HOM05D001348 ORTHO05D017988 2.0e-12 75.5 64 60.9
Os02g0528200 Oryza sativa ssp. japonica HOM05D001348 ORTHO05D002788 2.0e-12 75.5 64 54.7
AT2G36390 Arabidopsis thaliana HOM05D001348 ORTHO05D002788 2.6e-12 75.1 38 81.6
Gorai.005G101800 Gossypium raimondii HOM05D001348 ORTHO05D017988 2.6e-12 75.1 41 78.0
Gorai.011G217000 Gossypium raimondii HOM05D001348 ORTHO05D017988 2.6e-12 75.1 41 80.5
AL6G13160 Arabidopsis lyrata HOM05D001348 ORTHO05D002788 3.4e-12 74.7 41 80.5
AL4G32550 Arabidopsis lyrata HOM05D001348 ORTHO05D002788 4.5e-12 74.3 41 75.6
Gohir.D10G194700 Gossypium hirsutum HOM05D001348 ORTHO05D017988 4.5e-12 74.3 47 66.0
ATR0820G139 Amborella trichopoda HOM05D001348 ORTHO05D002788 1.0e-11 73.2 38 86.8
Sopen09g003920 Solanum pennellii HOM05D001348 ORTHO05D002788 1.3e-11 72.8 64 51.6
Gohir.D12G094200 Gossypium hirsutum HOM05D001348 ORTHO05D017988 2.2e-11 72.0 41 78.0
Gorai.008G102400 Gossypium raimondii HOM05D001348 ORTHO05D017988 2.2e-11 72.0 41 78.0
Gohir.D02G091050 Gossypium hirsutum HOM05D001348 ORTHO05D017988 2.9e-11 71.6 41 73.2
arahy.Tifrunner.gnm1.ann1.GBK6AY Arachis hypogaea HOM05D001348 ORTHO05D002788 5.0e-11 70.9 64 53.1
arahy.Tifrunner.gnm1.ann1.TU8IY1 Arachis hypogaea HOM05D001348 ORTHO05D002788 5.0e-11 70.9 64 53.1
Gohir.D12G130050 Gossypium hirsutum HOM05D001348 ORTHO05D017988 5.0e-11 70.9 41 78.0
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 5.0e-11 70.9 37 81.1
AagrBONN_evm.TU.Sc2ySwM_368.226 Anthoceros agrestis HOM05D001348 ORTHO05D002788 6.5e-11 70.5 37 83.8
Gohir.D11G289266 Gossypium hirsutum HOM05D001348 ORTHO05D011023 6.5e-11 70.5 39 79.5
CBR_g47092 Chara braunii HOM05D001348 ORTHO05D002788 8.5e-11 70.1 37 83.8
Duzib176G0002 Durio zibethinus HOM05D001348 ORTHO05D010969 8.5e-11 70.1 41 78.0
Actinidia34352 Actinidia chinensis HOM05D001348 ORTHO05D002788 2.5e-10 68.6 37 81.1
unitig_30.g34055 Utricularia gibba HOM05D001348 ORTHO05D002788 2.6e-07 58.5 29 86.2
MCO01G713 Micromonas commoda HOM05D001348 ORTHO05D002788 3.7e-06 54.7 29 79.3


User provided reference genes

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