Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 4.7e-230 800.8 397 100.0
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 1.4e-210 736.1 397 91.7
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 3.4e-196 688.3 393 85.8
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 4.7e-190 667.9 393 83.0
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 7.3e-183 644.0 394 79.7
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 1.5e-180 636.3 399 78.9
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 7.8e-177 624.0 392 77.3
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 2.5e-175 619.0 389 77.9
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 9.6e-175 617.1 388 77.8
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 1.4e-165 586.6 392 74.0
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 3.1e-165 585.5 392 74.0
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 2.5e-159 565.8 392 69.4
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 7.4e-159 564.3 394 69.5
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 5.8e-156 554.7 344 79.4
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 1.6e-150 536.6 396 63.6
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 2.8e-150 535.8 394 67.3
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 1.7e-147 526.6 393 65.6
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 5.0e-147 525.0 393 65.6
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 1.4e-146 523.5 388 67.3
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 2.5e-146 522.7 396 62.4
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 4.2e-146 521.9 396 62.1
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 9.4e-146 520.8 387 64.3
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 9.4e-146 520.8 391 65.7
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 2.1e-145 519.6 394 64.7
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 2.1e-145 519.6 387 63.6
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 3.6e-145 518.8 396 62.1
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 6.1e-145 518.1 396 63.1
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 7.9e-145 517.7 396 61.9
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 3.0e-144 515.8 387 63.0
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 5.1e-144 515.0 396 61.1
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 8.8e-144 514.2 395 64.1
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 8.8e-144 514.2 387 64.6
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.1e-143 513.8 386 65.0
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.5e-143 513.5 395 64.8
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 5.7e-143 511.5 398 63.3
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 5.7e-143 511.5 400 62.5
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 7.4e-143 511.1 391 63.7
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 2.8e-142 509.2 396 64.9
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 4.8e-142 508.4 391 62.9
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 8.2e-142 507.7 389 63.8
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.1e-141 507.3 388 63.4
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 1.1e-141 507.3 391 62.1
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 1.4e-141 506.9 389 63.5
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 2.4e-141 506.1 391 61.9
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 1.5e-140 503.4 389 63.8
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 2.0e-140 503.1 389 62.7
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 3.4e-140 502.3 396 64.1
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 3.4e-140 502.3 388 62.9
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 3.4e-140 502.3 396 61.4
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 3.4e-140 502.3 388 63.1
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 2.2e-139 499.6 398 62.3
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 2.9e-139 499.2 388 63.7
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 1.1e-138 497.3 388 62.1
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.1e-138 497.3 388 62.4
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 2.5e-138 496.1 393 62.1
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 4.2e-138 495.4 390 62.1
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 5.5e-138 495.0 388 62.4
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 9.4e-138 494.2 390 63.1
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 3.3e-135 485.7 376 62.8
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 3.3e-135 485.7 376 62.8
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 3.7e-134 482.3 387 59.7
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 6.3e-134 481.5 398 59.5
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 6.5e-131 471.5 388 59.0
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 1.6e-129 466.8 396 58.6
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 2.1e-129 466.5 396 58.6
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 4.7e-129 465.3 392 58.9
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 1.5e-127 460.3 406 57.6
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 2.0e-127 459.9 392 59.4
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 4.4e-127 458.8 398 58.8
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 1.7e-126 456.8 386 56.7
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 1.8e-125 453.4 390 57.4
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 9.1e-125 451.1 392 57.4
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 1.2e-124 450.7 383 58.2
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 1.6e-124 450.3 393 56.5
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 2.6e-124 449.5 397 55.9
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 4.5e-124 448.7 394 56.3
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 4.5e-124 448.7 394 56.3
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 1.3e-123 447.2 400 56.2
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 1.3e-123 447.2 391 56.5
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 6.5e-123 444.9 394 56.3
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 2.5e-122 443.0 394 55.8
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 2.3e-120 436.4 391 57.5
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 5.2e-120 435.3 392 54.3
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 1.2e-119 434.1 388 57.7
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 2.6e-119 433.0 392 56.1
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 4.4e-119 432.2 381 57.7
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 2.8e-118 429.5 377 55.7
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 4.5e-116 422.2 395 51.6
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 6.5e-115 418.3 370 56.2
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 5.2e-112 408.7 313 63.9
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 3.5e-108 396.0 360 56.9
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.1e-106 391.0 276 68.5
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 3.6e-105 386.0 358 53.9
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 1.0e-99 367.9 351 52.7
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 6.8e-96 355.1 241 72.2
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 3.2e-93 346.3 392 46.9
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 2.0e-92 343.6 381 43.3
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 5.0e-91 339.0 382 49.2
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 4.9e-86 322.4 375 43.7
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 3.9e-83 312.8 191 76.4
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 8.6e-83 311.6 266 60.5
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 1.1e-82 311.2 262 59.2
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 1.8e-80 303.9 389 41.9
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 1.7e-70 270.8 192 65.1
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 4.3e-66 256.1 161 71.4
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.8e-64 250.8 248 52.8
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.9e-53 214.2 160 65.0
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 7.1e-53 212.2 190 58.4
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 2.7e-52 210.3 198 54.0
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 3.9e-51 206.5 235 46.4
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 6.7e-51 205.7 191 56.5
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 4.6e-44 183.0 134 61.9
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 6.0e-44 182.6 109 77.1
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 1.3e-43 181.4 413 29.8
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 3.0e-43 180.3 146 61.0
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 3.3e-42 176.8 169 51.5
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 1.3e-41 174.9 421 28.3
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 4.1e-40 169.9 148 56.8
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 5.5e-37 159.5 93 77.4
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 3.3e-34 150.2 140 56.4
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 7.4e-34 149.1 242 36.0
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 2.2e-33 147.5 143 55.2
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 6.3e-33 146.0 378 30.2
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 4.5e-31 139.8 93 74.2
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 9.7e-26 122.1 89 65.2
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 1.8e-24 117.9 489 25.4
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 3.8e-22 110.2 84 58.3
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 8.5e-22 109.0 283 31.8
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 3.9e-19 100.1 57 75.4
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 1.8e-11 74.7 54 61.1
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 5.7e-10 69.7 84 44.0
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 8.2e-09 65.9 72 51.4


User provided reference genes

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