Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 1.1e-103 380.2 224 100.0
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 2.7e-94 349.0 199 93.5
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 1.1e-90 337.0 199 88.4
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 7.0e-90 334.3 194 89.2
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 1.2e-78 297.0 200 81.5
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 6.8e-77 291.2 200 79.5
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.1e-74 283.9 204 77.9
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 9.2e-74 280.8 204 77.0
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 1.6e-73 280.0 202 78.2
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 2.8e-70 269.2 165 85.5
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 1.1e-69 267.3 199 73.4
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 8.9e-69 264.2 203 72.4
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 1.2e-68 263.8 203 73.4
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 1.2e-68 263.8 203 73.4
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 3.4e-68 262.3 201 72.6
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 9.8e-68 260.8 206 71.8
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 1.3e-67 260.4 204 72.1
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.7e-67 260.0 199 72.4
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 3.7e-67 258.8 200 70.5
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 6.4e-67 258.1 201 73.1
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 6.4e-67 258.1 200 70.5
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 8.3e-67 257.7 202 70.8
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 8.3e-67 257.7 204 72.1
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 1.1e-66 257.3 201 70.6
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 2.4e-66 256.1 204 71.6
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 4.1e-66 255.4 204 71.1
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 7.1e-66 254.6 206 68.9
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 7.1e-66 254.6 199 71.4
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.2e-65 253.8 203 70.9
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 2.1e-65 253.1 200 70.5
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 2.7e-65 252.7 219 67.6
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 3.5e-65 252.3 204 72.1
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 6.0e-65 251.5 202 68.8
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 6.0e-65 251.5 199 70.9
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 1.7e-64 250.0 205 68.3
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 2.3e-64 249.6 208 67.8
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 2.3e-64 249.6 204 69.6
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 3.0e-64 249.2 202 67.8
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 6.6e-64 248.1 197 70.6
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 8.6e-64 247.7 202 69.3
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 1.1e-63 247.3 203 69.5
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 1.1e-63 247.3 205 70.7
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 1.5e-63 246.9 206 68.9
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.9e-63 246.5 196 70.9
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 3.3e-63 245.7 194 68.6
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 3.3e-63 245.7 205 70.7
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 4.3e-63 245.4 170 74.1
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 5.6e-63 245.0 188 71.8
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 7.3e-63 244.6 206 68.0
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 7.3e-63 244.6 210 65.7
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 1.2e-62 243.8 210 66.7
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 1.6e-62 243.4 184 70.7
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 1.6e-62 243.4 210 66.7
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 2.1e-62 243.0 209 67.0
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 3.6e-62 242.3 175 72.0
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 6.2e-62 241.5 202 67.3
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 1.1e-61 240.7 210 65.2
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 1.4e-61 240.4 209 68.9
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 1.8e-61 240.0 205 68.3
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 3.1e-61 239.2 173 73.4
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 3.1e-61 239.2 217 64.1
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 5.2e-61 238.4 173 73.4
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 5.2e-61 238.4 173 73.4
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 5.2e-61 238.4 173 73.4
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 5.2e-61 238.4 206 66.5
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 5.2e-61 238.4 184 67.9
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 6.8e-61 238.0 201 66.2
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 6.8e-61 238.0 201 65.7
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 6.8e-61 238.0 199 66.8
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 8.9e-61 237.7 196 68.9
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 1.5e-60 236.9 189 68.3
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 1.5e-60 236.9 212 62.7
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 2.0e-60 236.5 169 74.0
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 2.0e-60 236.5 190 70.5
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 2.6e-60 236.1 175 72.6
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 7.6e-60 234.6 201 65.2
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 1.7e-59 233.4 201 64.7
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 2.2e-59 233.0 201 64.7
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 2.2e-59 233.0 201 64.7
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 2.9e-59 232.6 203 65.5
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 2.9e-59 232.6 202 65.8
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 8.4e-59 231.1 193 65.8
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 1.4e-58 230.3 201 66.7
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.2e-57 227.3 204 64.7
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.6e-57 226.9 192 68.2
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.6e-57 226.9 204 64.7
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 2.3e-56 223.0 200 66.5
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 3.9e-56 222.2 203 62.6
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 1.5e-55 220.3 201 62.7
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 3.3e-55 219.2 202 64.9
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 5.6e-55 218.4 199 64.3
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 9.6e-55 217.6 192 64.1
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 9.6e-55 217.6 203 61.1
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 1.6e-54 216.9 201 61.2
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 3.6e-54 215.7 238 55.5
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 1.4e-53 213.8 201 64.2
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 1.8e-53 213.4 211 59.7
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 5.2e-53 211.8 190 62.6
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 8.9e-53 211.1 206 59.2
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 8.9e-53 211.1 159 74.2
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 7.6e-52 208.0 206 64.1
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 2.2e-51 206.5 223 57.4
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 1.1e-50 204.1 131 80.2
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 3.2e-50 202.6 138 77.5
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 2.3e-48 196.4 132 80.3
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 1.9e-47 193.4 162 66.0
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 1.9e-47 193.4 147 68.0
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 5.6e-47 191.8 122 83.6
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 3.6e-46 189.1 128 75.8
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 4.8e-46 188.7 130 74.6
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 1.1e-45 187.6 164 61.0
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 2.9e-43 179.5 131 74.0
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 1.1e-42 177.6 179 55.3
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 1.4e-42 177.2 201 52.7
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 2.7e-41 172.9 199 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 6.0e-41 171.8 193 51.8
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 6.6e-40 168.3 165 57.0
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 1.1e-39 167.5 133 71.4
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 2.1e-38 163.3 157 56.7
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 8.1e-38 161.4 111 75.7
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 4.9e-27 125.6 109 64.2
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 8.4e-27 124.8 165 50.9
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.2e-25 120.9 137 55.5
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 1.6e-25 120.6 105 60.0
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 5.3e-21 105.5 101 64.4
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 1.5e-20 104.0 140 45.7
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 8.7e-16 88.2 112 50.9
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.1e-15 87.8 193 37.8
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 9.7e-15 84.7 84 61.9
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 1.0e-08 64.7 108 49.1
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 1.8e-08 63.9 52 82.7
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 3.9e-08 62.8 46 67.4


User provided reference genes

Program Settings