Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 1.8e-227 792.3 418 100.0
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 3.2e-197 691.8 418 88.5
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 2.5e-181 639.0 418 81.3
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 3.6e-180 635.2 418 79.7
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 5.4e-160 568.2 435 69.7
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 7.3e-149 531.2 433 66.1
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 2.8e-148 529.3 431 67.1
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 3.1e-147 525.8 429 66.9
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 6.8e-139 498.0 499 58.1
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 1.3e-137 493.8 497 58.4
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 4.2e-128 462.2 390 66.2
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 9.0e-115 417.9 394 64.7
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 2.8e-100 369.8 436 52.3
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 1.8e-99 367.1 437 51.5
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 1.9e-96 357.1 436 50.5
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 3.6e-95 352.8 435 49.0
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 9.4e-88 328.2 434 48.2
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 1.2e-82 311.2 446 44.6
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 1.5e-82 310.8 423 43.7
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 1.6e-79 300.8 435 43.0
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 6.1e-79 298.9 435 43.4
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 3.3e-77 293.1 443 46.3
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 7.4e-77 292.0 455 43.7
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 7.4e-77 292.0 436 43.1
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 3.7e-76 289.7 437 42.8
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 3.7e-76 289.7 450 42.2
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 1.4e-75 287.7 438 45.2
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 2.6e-74 283.5 419 44.9
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 7.7e-74 282.0 428 44.2
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 8.5e-73 278.5 381 44.9
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 3.2e-72 276.6 437 44.9
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 2.4e-67 260.4 444 40.5
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 1.6e-66 257.7 432 42.6
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 2.0e-66 257.3 444 39.9
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 6.5e-65 252.3 420 41.2
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 7.2e-64 248.8 463 38.4
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 6.1e-63 245.7 284 49.3
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 8.0e-63 245.4 417 42.2
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 3.4e-61 240.0 504 36.5
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 5.7e-61 239.2 433 41.8
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 8.3e-60 235.3 435 38.6
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 5.4e-59 232.6 446 35.7
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 5.9e-58 229.2 429 39.6
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 5.9e-58 229.2 366 41.5
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 7.7e-58 228.8 443 37.7
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 1.3e-57 228.0 440 36.1
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 2.3e-57 227.3 448 40.2
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.9e-57 226.9 457 36.8
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 1.9e-56 224.2 385 38.4
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 3.3e-56 223.4 399 40.4
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 4.2e-56 223.0 395 41.5
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 1.4e-54 218.0 453 37.5
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 3.0e-54 216.9 430 40.0
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 7.5e-53 212.2 253 49.8
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 7.5e-53 212.2 456 34.6
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 2.4e-51 207.2 393 37.2
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 1.0e-49 201.8 341 40.2
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 8.6e-49 198.7 454 35.5
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 8.6e-49 198.7 439 36.0
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 1.9e-48 197.6 454 33.7
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 1.9e-48 197.6 446 35.4
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 5.6e-48 196.1 549 32.4
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 1.2e-47 194.9 444 33.3
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 2.8e-47 193.7 442 33.3
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 4.7e-47 193.0 444 33.6
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 1.4e-46 191.4 462 33.8
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 1.4e-46 191.4 444 34.0
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 2.6e-45 187.2 458 36.0
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 4.4e-45 186.4 391 36.3
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 5.8e-45 186.0 395 36.7
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 7.5e-45 185.7 424 34.4
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 7.5e-45 185.7 437 33.9
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 9.8e-45 185.3 422 33.9
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 2.9e-44 183.7 388 36.1
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 4.9e-44 183.0 419 33.4
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 6.4e-44 182.6 212 46.2
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.3e-44 182.2 319 39.8
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 4.1e-43 179.9 447 32.0
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 9.2e-43 178.7 362 35.1
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.6e-42 177.9 302 40.7
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 3.5e-42 176.8 428 32.7
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 1.0e-41 175.3 433 32.6
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 1.0e-41 175.3 428 33.2
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 1.3e-41 174.9 436 32.8
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 1.5e-40 171.4 428 32.9
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 1.9e-40 171.0 390 36.9
Ca_27661_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 2.8e-39 167.2 145 63.4
Ca_27662_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 2.8e-39 167.2 145 63.4
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 1.4e-38 164.9 489 31.1
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 1.5e-37 161.4 329 36.8
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 1.5e-37 161.4 432 32.4
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 2.6e-37 160.6 430 31.9
Rhsim06G0158200 Rhododendron simsii HOM05D005864 ORTHO05D006770 3.7e-36 156.8 468 32.7
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 4.1e-35 153.3 430 31.2
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 1.2e-34 151.8 377 31.8
TAR626G1271 Trochodendron aralioides HOM05D005864 ORTHO05D006770 2.1e-34 151.0 137 59.9
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 2.7e-34 150.6 528 26.9
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 7.8e-34 149.1 342 37.4
vmacro12226 Vaccinium macrocarpon HOM05D005864 ORTHO05D006770 1.1e-32 145.2 510 30.8
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 2.5e-32 144.1 348 35.3
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 2.5e-32 144.1 426 28.6
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 3.1e-30 137.1 440 30.9
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 1.3e-28 131.7 451 28.8
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 1.7e-28 131.3 426 29.3
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 1.4e-27 128.3 394 30.2
EL10Ac9g20653 Beta vulgaris HOM05D005864 ORTHO05D006770 2.4e-27 127.5 429 31.5
SEGI_09449 Sequoiadendron giganteum HOM05D005864 ORTHO05D006770 1.1e-24 118.6 262 34.4
FAN09G4739 Fragaria x ananassa HOM05D005864 ORTHO05D006770 6.2e-23 112.8 88 62.5
Zm00001eb273610 Zea mays HOM05D005864 ORTHO05D006770 5.2e-22 109.8 289 32.9
Ah.01g003700 Amaranthus hybridus HOM05D005864 ORTHO05D006770 9.9e-21 105.5 381 28.1
Mapoly0099s0053 Marchantia polymorpha HOM05D005864 ORTHO05D006770 4.1e-19 100.1 286 31.8
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 2.7e-18 97.4 163 39.9
TPR.G1791 Trifolium pratense HOM05D005864 ORTHO05D006770 6.9e-14 82.8 70 67.1
Pp3c11_20880 Physcomitrium patens HOM05D005864 ORTHO05D006770 4.9e-12 76.6 243 34.2
CDE05G1677 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 7.1e-11 72.8 52 63.5
Hund01249 Selenicereus undatus HOM05D005864 ORTHO05D006770 3.0e-09 67.4 132 39.4
Zm00001eb225260 Zea mays HOM05D005864 ORTHO05D006770 6.6e-09 66.2 226 27.9
AagrBONN_evm.TU.Sc2ySwM_369.130 Anthoceros agrestis HOM05D005864 ORTHO05D006770 1.1e-08 65.5 223 29.1
RcHm_v2.0_Chr2g0160061 Rosa chinensis HOM05D005864 ORTHO05D006770 3.3e-08 63.9 201 32.3
Lsat_1_v5_gn_9_59080 Lactuca sativa HOM05D005864 ORTHO05D006770 1.3e-07 62.0 87 42.5
SMO356G0193 Selaginella moellendorffii HOM05D005864 ORTHO05D006770 1.6e-07 61.6 235 29.4
TAR626G0331 Trochodendron aralioides HOM05D005864 ORTHO05D006770 4.8e-07 60.1 69 46.4
CSS0018090 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 2.4e-06 57.8 77 42.9
TAR375G0046 Trochodendron aralioides HOM05D005864 ORTHO05D006770 2.4e-06 57.8 42 61.9
TAR372G0002 Trochodendron aralioides HOM05D005864 ORTHO05D006770 5.3e-06 56.6 42 61.9


User provided reference genes

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