Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 2.1e-65 252.3 134 100.0
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 4.1e-53 211.5 132 88.6
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.7e-46 188.3 132 81.1
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.5e-42 176.4 132 77.3
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 1.7e-30 136.3 135 61.5
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 3.5e-28 128.6 136 58.8
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 9.5e-26 120.6 138 58.0
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 1.1e-21 107.1 130 53.1
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.1e-21 107.1 126 51.6
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 5.4e-21 104.8 131 58.0
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 7.1e-21 104.4 127 50.4
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 4.6e-20 101.7 127 52.0
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 8.6e-19 97.4 128 52.3
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 1.9e-18 96.3 138 50.7
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.5e-18 95.9 129 51.2
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 3.3e-18 95.5 129 55.0
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 3.3e-18 95.5 135 54.1
Ca_26200_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 4.3e-18 95.1 114 52.6
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 9.5e-18 94.0 134 46.3
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.6e-17 93.2 127 52.8
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 1.1e-16 90.5 55 85.5
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 1.4e-16 90.1 68 67.6
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 1.4e-16 90.1 128 52.3
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 2.3e-16 89.4 121 47.1
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.3e-16 89.4 135 51.1
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.3e-16 89.4 126 49.2
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 3.1e-16 89.0 128 46.9
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 5.2e-16 88.2 128 51.6
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 5.2e-16 88.2 127 48.0
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 6.8e-16 87.8 135 50.4
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 6.8e-16 87.8 125 49.6
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.5e-15 86.7 135 49.6
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 2.0e-15 86.3 130 47.7
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 2.0e-15 86.3 135 49.6
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.0e-15 86.3 135 49.6
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 4.4e-15 85.1 71 67.6
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 7.6e-15 84.3 131 48.1
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.2e-14 82.8 66 71.2
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 3.7e-14 82.0 127 48.8
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 4.9e-14 81.6 68 70.6
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 4.9e-14 81.6 63 66.7
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 6.4e-14 81.3 64 67.2
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 6.4e-14 81.3 127 44.1
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.1e-13 80.5 53 77.4
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 1.4e-13 80.1 126 45.2
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 1.9e-13 79.7 60 73.3
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.9e-13 79.7 70 62.9
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 2.4e-13 79.3 57 71.9
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.4e-13 79.3 86 54.7
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.4e-13 79.3 86 54.7
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.2e-13 79.0 86 54.7
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.2e-13 79.0 86 54.7
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 1.2e-12 77.0 65 66.2
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 1.2e-12 77.0 130 41.5
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 1.2e-12 77.0 128 42.2
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 1.2e-12 77.0 70 62.9
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 1.7e-11 73.2 38 92.1
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 3.0e-11 72.4 68 61.8
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 3.0e-11 72.4 57 70.2
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 3.9e-11 72.0 61 67.2
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 3.9e-11 72.0 73 52.1
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 8.6e-11 70.9 124 43.5
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 8.6e-11 70.9 93 52.7
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.1e-10 70.5 134 42.5
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-10 70.5 76 55.3
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 1.1e-10 70.5 101 51.5
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 1.9e-10 69.7 67 53.7
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.9e-10 69.7 124 43.5
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 2.5e-10 69.3 58 65.5
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 3.3e-10 68.9 129 42.6
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 3.3e-10 68.9 127 44.1
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 5.6e-10 68.2 124 41.9
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 5.6e-10 68.2 126 42.9
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 5.6e-10 68.2 49 69.4
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 7.3e-10 67.8 58 60.3
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 7.3e-10 67.8 66 60.6
Nn1g03759 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.6e-09 66.6 130 40.0
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 2.1e-09 66.2 82 50.0
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 2.1e-09 66.2 52 59.6
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 2.1e-09 66.2 73 53.4
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 2.8e-09 65.9 70 55.7
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 3.6e-09 65.5 64 57.8
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 4.7e-09 65.1 125 37.6
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.1e-08 63.9 60 51.7
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.1e-08 63.9 46 67.4
Medtr2g089190 Medicago truncatula HOM05D007156 ORTHO05D003871 1.1e-08 63.9 133 39.1
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 1.8e-08 63.2 46 63.0
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.8e-08 63.2 70 54.3
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 3.1e-08 62.4 57 59.6
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.0e-08 62.0 126 40.5
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 4.0e-08 62.0 37 73.0
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 5.2e-08 61.6 59 54.2
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 6.8e-08 61.2 58 51.7
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 8.9e-08 60.8 67 52.2
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 8.9e-08 60.8 56 58.9
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.2e-07 60.5 40 72.5
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 1.2e-07 60.5 51 54.9
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 1.5e-07 60.1 66 51.5
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 2.6e-07 59.3 87 43.7
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 2.6e-07 59.3 87 43.7
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 2.6e-07 59.3 69 53.6
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 3.4e-07 58.9 87 43.7
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 3.4e-07 58.9 64 51.6
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 3.4e-07 58.9 72 45.8
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 3.4e-07 58.9 78 43.6
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 4.4e-07 58.5 79 41.8
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 4.4e-07 58.5 72 43.1
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 4.4e-07 58.5 47 51.1
Aqoxy4G02532 Aquilegia oxysepala HOM05D007156 ORTHO05D003871 7.6e-07 57.8 66 51.5
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 7.6e-07 57.8 36 69.4
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 7.6e-07 57.8 52 53.8
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 9.9e-07 57.4 71 46.5
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 1.3e-06 57.0 70 52.9
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.7e-06 56.6 61 49.2
Os07g0549100 Oryza sativa ssp. japonica HOM05D052182 ORTHO05D003871 1.7e-06 56.6 47 59.6
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.7e-06 56.6 77 46.8
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 1.7e-06 56.6 83 41.0
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.2e-06 56.2 52 48.1
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.2e-06 56.2 36 66.7
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 2.2e-06 56.2 48 56.2
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 2.9e-06 55.8 84 42.9
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 2.9e-06 55.8 67 47.8
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 3.8e-06 55.5 87 42.5
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 3.8e-06 55.5 71 43.7
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 3.8e-06 55.5 71 43.7
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 4.9e-06 55.1 87 40.2
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 4.9e-06 55.1 41 58.5
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 6.4e-06 54.7 80 43.8
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 6.4e-06 54.7 69 44.9
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 6.4e-06 54.7 69 44.9
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 6.4e-06 54.7 77 46.8
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 6.4e-06 54.7 41 61.0
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 8.4e-06 54.3 64 45.3
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 8.4e-06 54.3 126 34.1
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 8.4e-06 54.3 63 44.4


User provided reference genes

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