Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G300700 Glycine max HOM05D007319 ORTHO05D008576 1.6e-48 195.7 95 100.0
Glyma.12G104000 Glycine max HOM05D007319 ORTHO05D008576 1.3e-37 159.5 98 82.7
Phvul.011G109000 Phaseolus vulgaris HOM05D007319 ORTHO05D008576 6.3e-32 140.6 98 73.5
Psat7g202760 Pisum sativum HOM05D007319 ORTHO05D008576 8.2e-24 113.6 101 61.4
Lalb_Chr03g0029031 Lupinus albus HOM05D007319 ORTHO05D008576 4.1e-23 111.3 98 61.2
Medtr0280s0030 Medicago truncatula HOM05D007319 ORTHO05D008576 1.2e-22 109.8 103 56.3
Medtr1g052840 Medicago truncatula HOM05D007319 ORTHO05D008576 5.9e-22 107.5 96 58.3
Atru.chr6.3094 Acer truncatum HOM05D007319 ORTHO05D008576 3.8e-21 104.8 98 59.2
Lj3g0006033 Lotus japonicus HOM05D007319 ORTHO05D008576 1.9e-20 102.4 98 54.1
Lj3g0020364 Lotus japonicus HOM05D007319 ORTHO05D008576 4.2e-20 101.3 98 55.1
Ca_08326_v3 Cicer arietinum L. HOM05D007319 ORTHO05D008576 7.2e-20 100.5 104 55.8
Atru.chr6.3563 Acer truncatum HOM05D007319 ORTHO05D008576 1.2e-19 99.8 98 56.1
CiPaw.04G121400 Carya illinoinensis HOM05D007319 ORTHO05D008576 2.1e-19 99.0 98 55.1
Haze_13028 Corylus avellana HOM05D007319 ORTHO05D008576 3.6e-19 98.2 98 52.0
QL08p036137 Quercus lobata HOM05D007319 ORTHO05D008576 6.1e-19 97.4 98 54.1
COL.COLO4_13062 Corchorus olitorius HOM05D007319 ORTHO05D008576 1.4e-18 96.3 98 54.1
ClCG02G001500 Citrullus lanatus HOM05D007319 ORTHO05D008576 4.0e-18 94.7 98 51.0
CANSAT64G1375 Cannabis sativa HOM05D007319 ORTHO05D008576 5.2e-18 94.4 98 51.0
Thecc.02G167300 Theobroma cacao HOM05D007319 ORTHO05D008576 6.8e-18 94.0 98 52.0
AT1G27410 Arabidopsis thaliana HOM05D007319 ORTHO05D008576 1.5e-17 92.8 83 56.6
Gohir.D11G230600 Gossypium hirsutum HOM05D007319 ORTHO05D008576 2.6e-17 92.0 98 53.1
Gorai.003G066900 Gossypium raimondii HOM05D007319 ORTHO05D008576 2.6e-17 92.0 98 53.1
Cfa014494 Carpinus fangiana HOM05D007319 ORTHO05D008576 3.4e-17 91.7 98 51.0
AL1G40820 Arabidopsis lyrata HOM05D007319 ORTHO05D008576 4.4e-17 91.3 83 55.4
Duzib132G0482 Durio zibethinus HOM05D007319 ORTHO05D008576 4.4e-17 91.3 98 53.1
Carub.0001s2595 Capsella rubella HOM05D007319 ORTHO05D008576 5.7e-17 90.9 83 57.8
QL08p036062 Quercus lobata HOM05D007319 ORTHO05D008576 5.7e-17 90.9 98 51.0
Sed0019912 Sechium edule HOM05D007319 ORTHO05D008576 1.3e-16 89.7 98 49.0
MELO3C018779.2 Cucumis melo HOM05D007319 ORTHO05D008576 2.8e-16 88.6 98 49.0
Sp3g33700 Schrenkiella parvula HOM05D007319 ORTHO05D008576 1.4e-15 86.3 69 60.9
Ciclev10017712m.g Citrus clementina HOM05D007319 ORTHO05D008576 3.1e-15 85.1 97 49.5
Hma1.2p1_1090F.1_g255770 Hydrangea macrophylla HOM05D007319 ORTHO05D008576 5.4e-15 84.3 85 56.5
Hma1.2p1_3430F.1_g336010 Hydrangea macrophylla HOM05D007319 ORTHO05D008576 5.4e-15 84.3 85 56.5
Thhalv10001995m.g Eutrema salsugineum HOM05D007319 ORTHO05D008576 9.1e-15 83.6 72 61.1
TWI18G1078 Tripterygium wilfordii HOM05D007319 ORTHO05D008576 9.1e-15 83.6 98 50.0
CARHR027000 Cardamine hirsuta HOM05D007319 ORTHO05D008576 1.2e-14 83.2 73 57.5
BolC7t40499H Brassica oleracea HOM05D007319 ORTHO05D008576 1.6e-14 82.8 73 57.5
C07p00530 Brassica napus HOM05D007319 ORTHO05D008576 2.0e-14 82.4 73 57.5
CsaV3_7G004000 Cucumis sativus L. HOM05D007319 ORTHO05D008576 2.0e-14 82.4 98 45.9
arahy.Tifrunner.gnm1.ann1.74LKV9 Arachis hypogaea HOM05D007319 ORTHO05D008576 3.5e-14 81.6 99 46.5
Sabra13G0120700 Salix brachista HOM05D007319 ORTHO05D008576 3.5e-14 81.6 73 60.3
Ciclev10015114m.g Citrus clementina HOM05D007319 ORTHO05D008576 4.5e-14 81.3 98 46.9
arahy.Tifrunner.gnm1.ann1.RET3PJ Arachis hypogaea HOM05D007319 ORTHO05D008576 5.9e-14 80.9 99 46.5
Cpa.g.sc17.7 Carica papaya HOM05D007319 ORTHO05D008576 5.9e-14 80.9 98 49.0
Potri.013G121700 Populus trichocarpa HOM05D007319 ORTHO05D008576 5.9e-14 80.9 73 57.5
A07p00250 Brassica napus HOM05D007319 ORTHO05D008576 7.7e-14 80.5 73 56.2
BraA07t27817Z Brassica rapa HOM05D007319 ORTHO05D008576 7.7e-14 80.5 73 56.2
AUR62025153 Chenopodium quinoa HOM05D007319 ORTHO05D008576 7.7e-14 80.5 101 50.5
THA.LOC104816143 Tarenaya hassleriana HOM05D007319 ORTHO05D008576 7.7e-14 80.5 71 56.3
AUR62033723 Chenopodium quinoa HOM05D007319 ORTHO05D008576 2.3e-13 79.0 101 49.5
Manes.13G087700 Manihot esculenta HOM05D007319 ORTHO05D008576 5.0e-13 77.8 86 54.7
GSVIVG01000444001 Vitis vinifera HOM05D007319 ORTHO05D008576 6.5e-13 77.4 60 66.7
Rhsim04G0059100 Rhododendron simsii HOM05D007319 ORTHO05D008576 1.1e-12 76.6 64 64.1
RhsimUnG0197400 Rhododendron simsii HOM05D007319 ORTHO05D008576 1.1e-12 76.6 64 64.1
EL10Ac9g20722 Beta vulgaris HOM05D007319 ORTHO05D008576 1.5e-12 76.3 98 48.0
BcaB03g16844 Brassica carinata HOM05D007319 ORTHO05D008576 1.5e-12 76.3 54 68.5
Nitab4.5_0000945g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 1.5e-12 76.3 55 67.3
vmacro09306 Vaccinium macrocarpon HOM05D007319 ORTHO05D008576 1.5e-12 76.3 59 67.8
Actinidia30494 Actinidia chinensis HOM05D007319 ORTHO05D008576 2.5e-12 75.5 84 50.0
Eucgr.A01754 Eucalyptus grandis HOM05D007319 ORTHO05D008576 2.5e-12 75.5 89 48.3
Oeu030702.1 Olea europaea HOM05D007319 ORTHO05D008576 3.2e-12 75.1 64 60.9
Ah.01g005180 Amaranthus hybridus HOM05D007319 ORTHO05D008576 4.2e-12 74.7 99 52.5
CSS0048621 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 4.2e-12 74.7 93 50.5
PGSC0003DMG400026178 Solanum tuberosum HOM05D007319 ORTHO05D008576 4.2e-12 74.7 87 47.1
TAR626G1179 Trochodendron aralioides HOM05D007319 ORTHO05D008576 4.2e-12 74.7 59 62.7
CSS0000364 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 5.5e-12 74.3 64 64.1
CSS0043355 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 5.5e-12 74.3 93 50.5
Dinv13851 Davidia involucrata HOM05D007319 ORTHO05D008576 7.2e-12 73.9 64 62.5
Nitab4.5_0010290g0020 Nicotiana tabacum HOM05D007319 ORTHO05D008576 7.2e-12 73.9 55 67.3
Solyc07g053210.3 Solanum lycopersicum HOM05D007319 ORTHO05D008576 7.2e-12 73.9 87 47.1
Sopen07g026770 Solanum pennellii HOM05D007319 ORTHO05D008576 7.2e-12 73.9 87 47.1
CAN.G640.27 Capsicum annuum HOM05D007319 ORTHO05D008576 1.6e-11 72.8 87 44.8
Peaxi162Scf00007g01823 Petunia axillaris HOM05D007319 ORTHO05D008576 1.6e-11 72.8 84 46.4
Sc23g0005010 Simmondsia chinensis HOM05D007319 ORTHO05D008576 3.6e-11 71.6 56 67.9
MSTRG.14170 Avicennia marina HOM05D007319 ORTHO05D008576 8.0e-11 70.5 85 50.6
PGR042G3383 Punica granatum HOM05D007319 ORTHO05D008576 8.0e-11 70.5 98 46.9
Lj1A744T30 Lonicera japonica HOM05D007319 ORTHO05D008576 1.0e-10 70.1 57 66.7
PSO541G2656 Papaver somniferum HOM05D007319 ORTHO05D008576 1.8e-10 69.3 52 65.4
MBI02_g10998_MAGBIO Magnolia biondii HOM05D003350 ORTHO05D008576 2.3e-10 68.9 94 43.6
CSS0021958 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 3.0e-10 68.6 93 48.4
Cc05_g05710 Coffea canephora HOM05D007319 ORTHO05D008576 3.0e-10 68.6 54 64.8
Hund01202 Selenicereus undatus HOM05D007319 ORTHO05D008576 3.0e-10 68.6 57 61.4
Ah.01g014450 Amaranthus hybridus HOM05D007319 ORTHO05D008576 5.2e-10 67.8 54 68.5
Ciclev10018156m.g Citrus clementina HOM05D007319 ORTHO05D008576 5.2e-10 67.8 57 63.2
DCAR_021209 Daucus carota HOM05D007319 ORTHO05D008576 5.2e-10 67.8 51 70.6
ECA246G0686 Erigeron canadensis HOM05D000038 ORTHO05D000689 5.2e-10 67.8 93 46.2
Migut.H01008 Erythranthe guttata HOM05D007319 ORTHO05D008576 8.8e-10 67.0 51 68.6
HanXRQChr17g0543141 Helianthus annuus HOM05D007319 ORTHO05D008576 8.8e-10 67.0 85 48.2
MBI02_g03610_MAGBIO Magnolia biondii HOM05D007319 ORTHO05D008576 8.8e-10 67.0 81 43.2
Aqoxy3G01438 Aquilegia oxysepala HOM05D003350 ORTHO05D008576 1.5e-09 66.2 75 50.7
Lsat_1_v5_gn_3_41840 Lactuca sativa HOM05D007319 ORTHO05D008576 2.6e-09 65.5 99 44.4
SGA_v2.0_scaffold49G18317 Striga asiatica HOM05D007319 ORTHO05D008576 2.6e-09 65.5 59 61.0
Zm00001eb369790 Zea mays HOM05D007319 ORTHO05D008576 7.5e-09 63.9 49 67.3
Lsat_1_v5_gn_3_41961 Lactuca sativa HOM05D000912 ORTHO05D008576 1.3e-08 63.2 64 54.7
Potri.013G149650 Populus trichocarpa HOM05D007319 ORTHO05D008576 1.3e-08 63.2 54 59.3
unitig_26.g9934 Utricularia gibba HOM05D002278 ORTHO05D008576 2.2e-08 62.4 96 45.8
SalBow1G3919 Salvia bowleyana HOM05D007319 ORTHO05D008576 4.9e-08 61.2 81 46.9
SalBow1G4158 Salvia bowleyana HOM05D007319 ORTHO05D008576 4.9e-08 61.2 81 46.9
SalBow1G6686 Salvia bowleyana HOM05D007319 ORTHO05D008576 4.9e-08 61.2 81 46.9
ATR1132G134 Amborella trichopoda HOM05D003350 ORTHO05D008576 5.4e-07 57.8 58 51.7


User provided reference genes

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