Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 4.0e-93 344.7 173 100.0
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 1.4e-42 176.8 90 96.7
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 5.3e-37 158.3 90 86.7
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 3.4e-36 155.6 94 81.9
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 5.9e-36 154.8 90 83.3
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 7.7e-36 154.5 89 85.4
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 6.5e-35 151.4 89 83.1
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 6.5e-35 151.4 89 82.0
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 4.2e-34 148.7 89 83.1
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 1.2e-33 147.1 89 80.9
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 2.7e-33 146.0 89 79.8
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 4.4e-31 138.7 83 84.3
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 6.3e-30 134.8 79 86.1
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 1.1e-29 134.0 97 71.1
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.8e-29 133.3 89 75.3
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 1.2e-28 130.6 89 75.3
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 1.5e-28 130.2 89 76.4
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 2.0e-28 129.8 89 74.2
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 4.5e-28 128.6 83 75.9
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 4.5e-28 128.6 83 74.7
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 5.9e-28 128.3 83 74.7
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 5.9e-28 128.3 89 74.2
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 5.9e-28 128.3 103 65.0
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 7.7e-28 127.9 89 71.9
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 7.7e-28 127.9 83 75.9
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 1.0e-27 127.5 83 75.9
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 1.0e-27 127.5 86 70.9
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 1.3e-27 127.1 83 75.9
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 1.3e-27 127.1 86 70.9
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 1.3e-27 127.1 89 71.9
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.3e-27 127.1 83 73.5
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.3e-27 127.1 83 73.5
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 1.3e-27 127.1 83 73.5
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.3e-27 127.1 89 71.9
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 2.2e-27 126.3 89 73.0
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 2.2e-27 126.3 87 73.6
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 2.2e-27 126.3 87 73.6
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 2.2e-27 126.3 89 70.8
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 2.2e-27 126.3 89 71.9
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 2.2e-27 126.3 93 68.8
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 2.9e-27 125.9 83 74.7
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 2.9e-27 125.9 112 58.9
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 3.8e-27 125.6 89 69.7
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 3.8e-27 125.6 83 73.5
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 3.8e-27 125.6 83 73.5
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 3.8e-27 125.6 83 74.7
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 3.8e-27 125.6 99 62.6
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 3.8e-27 125.6 87 71.3
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 5.0e-27 125.2 89 69.7
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 5.0e-27 125.2 89 69.7
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 5.0e-27 125.2 83 74.7
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 5.0e-27 125.2 89 69.7
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 5.0e-27 125.2 89 69.7
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 5.0e-27 125.2 83 73.5
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 6.5e-27 124.8 87 71.3
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 6.5e-27 124.8 89 69.7
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 1.1e-26 124.0 83 72.3
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 1.1e-26 124.0 89 71.9
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 1.1e-26 124.0 89 68.5
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.5e-26 123.6 83 75.9
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 1.5e-26 123.6 83 72.3
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 1.9e-26 123.2 89 68.5
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 2.5e-26 122.9 83 72.3
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 2.5e-26 122.9 89 69.7
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 2.5e-26 122.9 83 72.3
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.2e-26 122.5 83 72.3
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 4.2e-26 122.1 83 73.5
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 5.5e-26 121.7 83 72.3
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 7.2e-26 121.3 89 68.5
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 1.6e-25 120.2 89 66.3
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 2.1e-25 119.8 83 69.9
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 2.7e-25 119.4 89 64.0
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 2.7e-25 119.4 83 68.7
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 3.6e-25 119.0 89 65.2
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 6.1e-25 118.2 83 68.7
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 6.1e-25 118.2 80 73.8
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 6.1e-25 118.2 79 75.9
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.0e-24 117.5 83 68.7
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 1.0e-24 117.5 83 69.9
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 1.4e-24 117.1 81 67.9
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.8e-24 116.7 78 74.4
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 2.3e-24 116.3 89 65.2
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 2.3e-24 116.3 81 71.6
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 6.7e-24 114.8 83 68.7
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.1e-23 114.0 83 68.7
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 1.5e-23 113.6 87 65.5
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 2.6e-23 112.8 81 66.7
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 2.6e-23 112.8 83 66.3
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.3e-22 110.5 83 66.3
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 1.3e-22 110.5 83 65.1
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 2.2e-22 109.8 79 68.4
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 3.7e-22 109.0 79 67.1
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 6.3e-22 108.2 80 67.5
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 6.3e-22 108.2 71 76.1
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 8.2e-22 107.8 81 67.9
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.1e-21 107.5 83 65.1
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 2.4e-21 106.3 81 60.5
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 5.3e-21 105.1 83 63.9
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 7.0e-21 104.8 81 59.3
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 7.0e-21 104.8 79 65.8
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 9.1e-21 104.4 81 59.3
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 1.6e-20 103.6 81 58.0
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 2.0e-20 103.2 81 58.0
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 2.6e-20 102.8 81 56.8
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 4.5e-20 102.1 81 56.8
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 4.5e-20 102.1 81 56.8
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 4.5e-20 102.1 81 56.8
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 4.5e-20 102.1 81 56.8
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 1.0e-19 100.9 88 55.7
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 1.7e-19 100.1 81 55.6
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 2.9e-19 99.4 81 55.6
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 2.9e-19 99.4 81 55.6
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 5.0e-19 98.6 83 60.2
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 8.5e-19 97.8 68 69.1
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 6.1e-17 91.7 89 56.2
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 8.0e-17 91.3 83 57.8
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 1.0e-16 90.9 61 72.1
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 1.2e-15 87.4 86 46.5
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 2.6e-15 86.3 68 58.8
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 5.7e-15 85.1 87 56.3
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 4.1e-13 79.0 55 70.9
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 1.2e-12 77.4 81 46.9
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 2.0e-12 76.6 58 67.2
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 7.7e-12 74.7 44 77.3
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.0e-11 74.3 88 53.4
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 1.0e-11 74.3 83 50.6
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 1.3e-11 73.9 82 47.6
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.9e-10 70.1 83 41.0
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.2e-09 67.4 51 66.7
Psat7g168960 Pisum sativum HOM05D006477 ORTHO05D008311 1.6e-09 67.0 46 73.9
Psat0s466g0120 Pisum sativum HOM05D006477 ORTHO05D008311 2.7e-09 66.2 46 71.7
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 3.6e-09 65.9 90 45.6
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 4.7e-09 65.5 87 42.5
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 6.1e-09 65.1 58 55.2
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 6.1e-09 65.1 57 57.9
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 8.0e-09 64.7 57 57.9
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 1.0e-08 64.3 54 55.6
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 1.0e-08 64.3 82 46.3
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.4e-08 63.9 90 45.6
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 5.2e-08 62.0 69 49.3
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 5.2e-08 62.0 83 38.6
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 6.8e-08 61.6 88 42.0
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.2e-07 60.8 54 55.6
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.5e-07 60.5 88 39.8
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.5e-07 60.5 83 41.0
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.6e-07 59.7 58 53.4
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 2.6e-07 59.7 42 59.5
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 3.4e-07 59.3 57 56.1
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 4.4e-07 58.9 79 41.8
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 4.4e-07 58.9 62 50.0
PSO017G6472 Papaver somniferum HOM05D006477 ORTHO05D008311 4.4e-07 58.9 55 52.7
PSO017G6604 Papaver somniferum HOM05D006477 ORTHO05D008311 4.4e-07 58.9 55 52.7
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 5.7e-07 58.5 83 43.4
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 5.7e-07 58.5 39 64.1
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 9.8e-07 57.8 87 44.8
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 9.8e-07 57.8 105 38.1
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 9.8e-07 57.8 53 49.1
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 1.3e-06 57.4 46 54.3
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 1.3e-06 57.4 82 42.7
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.7e-06 57.0 87 39.1
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.2e-06 56.6 104 36.5
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.2e-06 56.6 85 43.5
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 3.7e-06 55.8 80 38.8
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 3.7e-06 55.8 78 43.6
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 4.9e-06 55.5 53 52.8
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.3e-06 55.1 85 42.4
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 8.3e-06 54.7 84 40.5


User provided reference genes

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