Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 3.1e-69 265.0 134 100.0
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 3.1e-69 265.0 134 100.0
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.5e-50 203.0 133 78.9
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 9.4e-50 200.3 133 78.2
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 3.4e-47 191.8 128 77.3
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 3.8e-43 178.3 127 70.1
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.5e-42 176.4 127 70.9
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 7.2e-42 174.1 133 68.4
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 9.5e-42 173.7 127 67.7
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 3.6e-41 171.8 133 65.4
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 4.0e-40 168.3 133 66.2
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 5.2e-40 167.9 133 63.2
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 5.2e-40 167.9 129 67.4
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.7e-38 162.9 133 60.9
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 5.0e-35 151.4 133 59.4
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 8.6e-35 150.6 129 60.5
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.1e-34 150.2 135 57.8
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.5e-34 149.8 135 56.3
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.9e-34 149.4 128 60.9
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.9e-34 149.4 128 60.9
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.9e-34 149.4 128 60.9
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.5e-34 149.1 129 59.7
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 2.5e-34 149.1 135 57.0
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 3.3e-34 148.7 129 58.9
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.3e-34 148.3 129 57.4
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.6e-34 147.9 130 57.7
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 7.3e-34 147.5 128 59.4
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.3e-34 147.5 135 55.6
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 9.5e-34 147.1 134 57.5
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 9.5e-34 147.1 134 57.5
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.2e-33 146.7 135 56.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.6e-33 146.4 129 58.1
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 1.6e-33 146.4 128 60.2
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.6e-33 146.4 129 58.9
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 2.1e-33 146.0 129 57.4
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 2.1e-33 146.0 130 56.9
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.1e-33 146.0 130 56.2
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 2.8e-33 145.6 129 57.4
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 2.8e-33 145.6 129 57.4
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 2.8e-33 145.6 128 59.4
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 3.6e-33 145.2 129 57.4
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 3.6e-33 145.2 128 59.4
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.7e-33 144.8 128 57.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.7e-33 144.8 134 56.7
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 4.7e-33 144.8 134 56.7
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 6.2e-33 144.4 134 59.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 8.0e-33 144.1 129 57.4
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.0e-32 143.7 129 56.6
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.0e-32 143.7 134 56.0
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.8e-32 142.9 135 55.6
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.8e-32 142.9 129 57.4
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.3e-32 142.5 128 57.0
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 2.3e-32 142.5 127 59.8
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 3.1e-32 142.1 135 55.6
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.1e-32 142.1 129 58.1
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.0e-32 141.7 128 56.2
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.2e-32 141.4 129 55.8
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 6.8e-32 141.0 134 55.2
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 6.8e-32 141.0 133 52.6
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 8.9e-32 140.6 128 56.2
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 8.9e-32 140.6 127 59.1
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 8.9e-32 140.6 134 52.2
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.2e-31 140.2 128 56.2
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.0e-31 139.4 128 56.2
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.0e-31 139.4 129 53.5
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 2.6e-31 139.0 137 53.3
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 2.6e-31 139.0 134 53.7
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 2.6e-31 139.0 128 57.8
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 3.4e-31 138.7 134 52.2
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 3.4e-31 138.7 129 55.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 5.8e-31 137.9 140 52.1
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 5.8e-31 137.9 132 56.1
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 7.5e-31 137.5 141 52.5
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.5e-31 137.5 135 54.1
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 7.5e-31 137.5 128 57.0
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 7.5e-31 137.5 133 52.6
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 7.5e-31 137.5 129 55.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 9.8e-31 137.1 128 55.5
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 9.8e-31 137.1 127 58.3
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 9.8e-31 137.1 127 58.3
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.3e-30 136.7 127 55.9
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.7e-30 136.3 128 54.7
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.7e-30 136.3 127 55.9
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.2e-30 136.0 133 50.4
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 2.2e-30 136.0 129 56.6
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 2.2e-30 136.0 134 53.0
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 2.9e-30 135.6 141 51.1
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.9e-30 135.6 127 52.8
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 3.7e-30 135.2 134 53.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.7e-30 135.2 134 50.7
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 3.7e-30 135.2 128 54.7
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 6.4e-30 134.4 131 52.7
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 2.4e-29 132.5 134 50.0
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 4.1e-29 131.7 129 51.2
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 5.4e-29 131.3 135 53.3
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 9.2e-29 130.6 127 51.2
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 9.2e-29 130.6 134 51.5
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.2e-28 130.2 139 51.1
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-28 129.8 131 51.9
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 3.5e-28 128.6 135 54.1
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 7.8e-28 127.5 118 56.8
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.0e-27 127.1 128 52.3
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.3e-27 126.7 127 52.0
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.3e-27 126.7 121 53.7
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-27 126.7 121 53.7
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-27 126.7 121 53.7
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-27 126.7 121 53.7
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.7e-27 126.3 130 51.5
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.3e-27 125.9 129 48.8
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.0e-27 125.6 123 52.8
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.0e-27 125.6 123 52.8
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.9e-27 125.2 121 52.9
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 5.0e-27 124.8 120 53.3
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.1e-26 123.6 124 53.2
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.1e-26 123.6 132 49.2
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.9e-26 122.9 127 51.2
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.9e-26 122.9 127 50.4
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 5.6e-26 121.3 162 45.7
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 5.6e-26 121.3 126 49.2
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 9.5e-26 120.6 132 46.2
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 9.5e-26 120.6 127 50.4
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 1.2e-25 120.2 126 51.6
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.6e-25 119.8 136 47.8
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.1e-25 119.4 147 46.9
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 6.2e-25 117.9 127 47.2
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.1e-24 117.1 127 46.5
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.8e-24 116.3 127 47.2
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.0e-23 112.8 128 49.2
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.0e-23 112.8 127 47.2
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 4.4e-23 111.7 127 48.8
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 5.8e-23 111.3 127 45.7
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 5.8e-23 111.3 134 44.0
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 5.8e-23 111.3 127 45.7
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 5.8e-23 111.3 127 45.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 5.8e-23 111.3 134 44.0
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 5.8e-23 111.3 127 45.7
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 5.8e-23 111.3 128 47.7
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 7.5e-23 110.9 207 35.7
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 9.8e-23 110.5 127 44.9
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.1e-21 107.1 75 69.3
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 2.4e-21 105.9 177 37.9
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 9.2e-21 104.0 130 46.9
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.7e-19 99.8 130 44.6
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 3.9e-19 98.6 129 46.5
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 5.1e-19 98.2 121 47.9
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 6.6e-19 97.8 86 59.3
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 6.6e-19 97.8 86 59.3
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.9e-18 96.3 89 52.8
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 3.3e-18 95.5 129 45.0
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 3.3e-18 95.5 89 55.1
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 4.3e-18 95.1 90 51.1
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 5.6e-18 94.7 88 55.7
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.1e-16 90.5 90 54.4
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.8e-16 89.7 89 50.6
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.6e-15 85.9 110 47.3
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 3.4e-15 85.5 92 48.9
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 5.4e-13 78.2 81 49.4
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 6.0e-12 74.7 86 41.9
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 7.8e-12 74.3 72 55.6
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.0e-11 73.9 82 50.0
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.0e-11 73.9 123 34.1
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.6e-11 70.9 103 36.9
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 2.4e-08 62.8 121 32.2
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 5.2e-08 61.6 129 38.0
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.4e-07 58.5 123 25.2
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.7e-06 56.6 90 33.3
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 4.9e-06 55.1 46 60.9


User provided reference genes

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