Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.2e-70 268.9 137 100.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 4.3e-66 254.6 151 88.1
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.5e-42 175.6 152 66.4
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 6.1e-28 127.9 146 47.9
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.5e-26 123.2 151 44.4
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 4.4e-26 121.7 146 46.6
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 4.4e-26 121.7 145 47.6
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 2.8e-25 119.0 144 44.4
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 3.7e-25 118.6 153 46.4
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 3.7e-25 118.6 150 42.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.4e-24 116.7 151 42.4
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-24 116.3 151 41.1
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 2.4e-24 115.9 153 45.8
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 3.8e-22 108.6 152 45.4
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 7.2e-21 104.4 143 43.4
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.2e-20 103.6 142 40.8
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.2e-20 103.6 142 40.1
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 3.6e-20 102.1 142 40.1
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.8e-19 99.8 149 40.9
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 5.2e-19 98.2 150 40.7
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 5.2e-19 98.2 143 39.9
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 5.2e-19 98.2 143 39.2
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 1.2e-18 97.1 144 41.0
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.5e-18 96.7 144 39.6
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 3.4e-18 95.5 138 41.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 3.4e-18 95.5 140 38.6
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 7.5e-18 94.4 144 38.2
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 7.5e-18 94.4 149 38.3
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 9.7e-18 94.0 144 36.8
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 9.7e-18 94.0 144 40.3
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 9.7e-18 94.0 144 38.9
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.3e-17 93.6 144 36.8
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.3e-17 93.6 143 39.9
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.3e-17 93.6 144 38.9
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.3e-17 93.6 144 39.6
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.3e-17 93.6 144 38.9
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.3e-17 93.6 144 38.9
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.7e-17 93.2 144 41.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.7e-17 93.2 144 38.9
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.7e-17 93.2 148 37.8
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 2.2e-17 92.8 145 37.9
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 2.8e-17 92.4 143 39.9
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.7e-17 92.0 144 38.2
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.7e-17 92.0 148 39.2
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.7e-17 92.0 148 39.2
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 3.7e-17 92.0 148 39.2
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 4.8e-17 91.7 149 36.9
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.8e-17 91.7 150 38.0
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 6.3e-17 91.3 145 38.6
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 6.3e-17 91.3 151 37.1
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 6.3e-17 91.3 144 36.8
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.3e-17 91.3 144 39.6
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 6.3e-17 91.3 133 37.6
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 6.3e-17 91.3 150 39.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 8.3e-17 90.9 137 37.2
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.1e-16 90.5 144 37.5
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.1e-16 90.5 148 35.8
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.1e-16 90.5 143 37.8
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.4e-16 90.1 149 35.6
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 1.4e-16 90.1 148 38.5
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.8e-16 89.7 144 36.1
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.8e-16 89.7 144 37.5
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.8e-16 89.7 144 37.5
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.8e-16 89.7 144 35.4
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.8e-16 89.7 148 36.5
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.8e-16 89.7 148 36.5
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 1.8e-16 89.7 145 37.2
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.4e-16 89.4 144 36.8
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.4e-16 89.4 144 37.5
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.4e-16 89.4 143 37.8
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 3.1e-16 89.0 142 38.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.1e-16 89.0 149 37.6
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.1e-16 88.6 146 36.3
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 4.1e-16 88.6 142 37.3
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.1e-16 88.6 148 37.8
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 5.3e-16 88.2 143 37.1
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.3e-16 88.2 143 37.1
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.3e-16 88.2 146 36.3
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.3e-16 88.2 143 37.1
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 5.3e-16 88.2 144 37.5
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 7.0e-16 87.8 150 38.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 9.1e-16 87.4 144 36.8
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.2e-15 87.0 140 37.9
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.2e-15 87.0 147 36.7
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.6e-15 86.7 142 35.2
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.6e-15 86.7 151 35.1
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 2.0e-15 86.3 147 35.4
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 2.0e-15 86.3 148 35.1
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.0e-15 86.3 144 36.1
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.7e-15 85.9 144 34.0
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 2.7e-15 85.9 142 33.1
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 2.7e-15 85.9 144 36.1
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 3.5e-15 85.5 156 34.6
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 3.5e-15 85.5 151 33.8
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 3.5e-15 85.5 147 35.4
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 4.5e-15 85.1 146 37.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.5e-15 85.1 144 34.7
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 4.5e-15 85.1 149 33.6
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 4.5e-15 85.1 144 37.5
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 4.5e-15 85.1 148 33.1
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 5.9e-15 84.7 149 32.9
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 7.7e-15 84.3 144 37.5
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 7.7e-15 84.3 149 34.2
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 7.7e-15 84.3 154 33.1
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 7.7e-15 84.3 146 34.9
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 1.0e-14 84.0 144 36.1
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.3e-14 83.6 150 36.7
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.7e-14 83.2 146 32.9
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 2.2e-14 82.8 155 32.9
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.8e-14 82.0 144 32.6
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 8.5e-14 80.9 149 32.9
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.5e-13 80.1 152 32.2
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.5e-13 80.1 144 34.7
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.9e-13 79.7 135 39.3
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.5e-13 79.3 131 35.9
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.2e-13 78.6 164 33.5
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 9.4e-13 77.4 146 33.6
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.6e-12 76.6 160 30.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 2.7e-12 75.9 149 30.2
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.7e-12 75.9 152 31.6
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.1e-12 74.7 149 31.5
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 8.0e-12 74.3 140 32.1
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.0e-11 73.9 131 38.2
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.4e-11 73.6 96 37.5
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.0e-11 72.4 149 31.5
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 4.0e-11 72.0 181 30.9
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.2e-11 71.6 149 30.2
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 5.2e-11 71.6 100 36.0
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 6.8e-11 71.2 141 30.5
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 8.8e-11 70.9 148 28.4
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-10 70.5 149 29.5
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 4.4e-10 68.6 149 28.9
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 4.4e-10 68.6 149 28.9
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 4.4e-10 68.6 149 30.9
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 7.5e-10 67.8 97 35.1
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 7.5e-10 67.8 97 35.1
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 9.8e-10 67.4 99 35.4
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.7e-09 66.6 149 26.8
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.7e-09 66.6 149 28.9
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.7e-09 66.6 152 29.6
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 6.3e-09 64.7 149 26.2
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.4e-08 63.5 150 27.3
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.8e-08 63.2 148 31.1
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.4e-08 62.8 129 38.0
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.4e-08 62.8 129 38.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.0e-07 59.7 113 31.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.7e-07 59.3 125 28.8
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 7.7e-07 57.8 221 24.0
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 6.6e-06 54.7 59 44.1


User provided reference genes

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