Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G283500 Glycine max HOM05D006652 ORTHO05D008645 2.4e-167 592.0 293 100.0
Glyma.12G122700 Glycine max HOM05D006652 ORTHO05D008645 8.5e-136 487.3 292 87.3
Phvul.011G134400 Phaseolus vulgaris HOM05D006652 ORTHO05D008645 4.3e-132 474.9 292 83.2
Glyma.06G283400 Glycine max HOM05D006652 ORTHO05D008645 5.0e-128 461.5 290 82.1
VMungo1127G0176 Vigna mungo HOM05D006652 ORTHO05D008645 3.9e-125 451.8 292 79.1
Glyma.06G283600 Glycine max HOM05D006652 ORTHO05D008645 5.1e-125 451.4 292 79.8
Lj3g0009013 Lotus japonicus HOM05D006652 ORTHO05D008645 2.6e-124 449.1 290 78.6
Ca_18890_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 6.5e-120 434.5 292 75.7
Medtr4g079750 Medicago truncatula HOM05D006652 ORTHO05D008645 3.2e-119 432.2 292 74.7
Lalb_Chr19g0134921 Lupinus albus HOM05D006652 ORTHO05D008645 4.2e-119 431.8 292 75.7
arahy.Tifrunner.gnm1.ann1.KP1SVS Arachis hypogaea HOM05D006652 ORTHO05D008645 1.5e-116 423.3 292 72.9
arahy.Tifrunner.gnm1.ann1.5ZDL5Q Arachis hypogaea HOM05D006652 ORTHO05D008645 3.3e-116 422.2 292 72.9
Actinidia39342 Actinidia chinensis HOM05D006652 ORTHO05D008645 2.5e-111 406.0 292 69.2
QL08p041412 Quercus lobata HOM05D006652 ORTHO05D008645 2.7e-110 402.5 290 70.3
CSS0047332 Camellia sinensis var. sinensis HOM05D006652 ORTHO05D008645 6.1e-110 401.4 290 68.6
vmacro09218 Vaccinium macrocarpon HOM05D006652 ORTHO05D008645 2.3e-109 399.4 290 69.0
TAR629G0548 Trochodendron aralioides HOM05D006652 ORTHO05D008645 1.2e-108 397.1 292 67.8
GSVIVG01020686001 Vitis vinifera HOM05D006652 ORTHO05D008645 2.0e-108 396.4 290 68.3
Dinv08786 Davidia involucrata HOM05D006652 ORTHO05D008645 2.6e-108 396.0 290 67.9
Aqoxy4G00418 Aquilegia oxysepala HOM05D006652 ORTHO05D008645 5.7e-108 394.8 290 69.0
MBI11_g14404_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 1.3e-107 393.7 291 66.7
CiPaw.03G187000 Carya illinoinensis HOM05D006652 ORTHO05D008645 2.2e-107 392.9 300 67.0
Hma1.2p1_0166F.1_g073540 Hydrangea macrophylla HOM05D006652 ORTHO05D008645 3.7e-107 392.1 290 68.3
Nn1g04382 Nelumbo nucifera HOM05D006652 ORTHO05D008645 3.7e-107 392.1 290 66.9
Gohir.D10G112300 Gossypium hirsutum HOM05D006652 ORTHO05D008645 1.2e-105 387.1 290 66.6
Gorai.011G124200 Gossypium raimondii HOM05D006652 ORTHO05D008645 1.2e-105 387.1 290 66.6
COL.COLO4_33547 Corchorus olitorius HOM05D006652 ORTHO05D008645 2.0e-105 386.3 290 66.9
Duzib187G0644 Durio zibethinus HOM05D006652 ORTHO05D008645 2.0e-105 386.3 290 68.3
Nitab4.5_0000822g0100 Nicotiana tabacum HOM05D006652 ORTHO05D008645 2.0e-105 386.3 290 66.6
Gohir.A10G153800 Gossypium hirsutum HOM05D006652 ORTHO05D008645 2.7e-105 386.0 290 66.6
AUR62038922 Chenopodium quinoa HOM05D006652 ORTHO05D008645 1.7e-104 383.3 290 65.9
Thecc.01G148700 Theobroma cacao HOM05D006652 ORTHO05D008645 2.2e-104 382.9 290 67.2
Migut.H02157 Erythranthe guttata HOM05D006652 ORTHO05D008645 2.9e-104 382.5 290 65.9
unitig_21.g20276 Utricularia gibba HOM05D006652 ORTHO05D008645 8.5e-104 380.9 290 65.9
Nitab4.5_0008146g0020 Nicotiana tabacum HOM05D006652 ORTHO05D008645 1.1e-103 380.6 289 65.1
Lj8C103T10 Lonicera japonica HOM05D006652 ORTHO05D008645 1.5e-103 380.2 292 66.4
Os10g0181600 Oryza sativa ssp. japonica HOM05D006652 ORTHO05D008645 1.5e-103 380.2 289 65.7
Peaxi162Scf00241g00812 Petunia axillaris HOM05D006652 ORTHO05D008645 1.9e-103 379.8 290 64.8
SalBow7G3656 Salvia bowleyana HOM05D006652 ORTHO05D008645 1.9e-103 379.8 290 64.8
Potri.019G089700 Populus trichocarpa HOM05D006652 ORTHO05D008645 7.2e-103 377.9 289 63.7
CAN.G782.5 Capsicum annuum HOM05D006652 ORTHO05D008645 9.4e-103 377.5 290 64.1
Solyc10g008020.3 Solanum lycopersicum HOM05D006652 ORTHO05D008645 9.4e-103 377.5 290 64.5
Sopen10g003890 Solanum pennellii HOM05D006652 ORTHO05D008645 9.4e-103 377.5 290 64.5
Ciclev10015734m.g Citrus clementina HOM05D006652 ORTHO05D008645 1.6e-102 376.7 292 64.7
Sabra19G0103300 Salix brachista HOM05D006652 ORTHO05D008645 1.6e-102 376.7 289 63.0
HanXRQChr17g0558041 Helianthus annuus HOM05D006652 ORTHO05D008645 2.1e-102 376.3 290 64.5
Sabra19G0100100 Salix brachista HOM05D006652 ORTHO05D008645 2.1e-102 376.3 289 62.6
ECA234G1589 Erigeron canadensis HOM05D006652 ORTHO05D008645 2.7e-102 375.9 290 65.5
Rhsim04G0074100 Rhododendron simsii HOM05D006652 ORTHO05D008645 4.7e-102 375.2 343 58.3
Lsat_1_v5_gn_8_140221 Lactuca sativa HOM05D006652 ORTHO05D008645 1.8e-101 373.2 290 64.5
Sed0018596 Sechium edule HOM05D006652 ORTHO05D008645 1.8e-101 373.2 290 63.8
Zm00001eb223890 Zea mays HOM05D006652 ORTHO05D008645 3.0e-101 372.5 289 64.4
Atru.chr6.2810_Atru.chr6.2811 Acer truncatum HOM05D006652 ORTHO05D008645 4.0e-101 372.1 292 64.7
EL10Ac9g20915 Beta vulgaris HOM05D006652 ORTHO05D008645 5.2e-101 371.7 293 64.8
Eucgr.K01102 Eucalyptus grandis HOM05D006652 ORTHO05D008645 6.8e-101 371.3 292 63.7
PGR142G2816 Punica granatum HOM05D006652 ORTHO05D008645 3.4e-100 369.0 290 64.5
MSTRG.14312 Avicennia marina HOM05D006652 ORTHO05D008645 1.7e-99 366.7 290 63.1
Hund07829 Selenicereus undatus HOM05D006652 ORTHO05D008645 2.2e-99 366.3 292 62.0
CsaV3_6G018460 Cucumis sativus L. HOM05D006652 ORTHO05D008645 1.1e-98 364.0 290 62.1
ATR0661G163 Amborella trichopoda HOM05D006652 ORTHO05D008645 8.6e-96 354.4 289 60.6
PGSC0003DMG400010544 Solanum tuberosum HOM05D006652 ORTHO05D008645 2.8e-94 349.4 354 52.5
Psat7g166280 Pisum sativum HOM05D006652 ORTHO05D008645 2.3e-93 346.3 234 72.2
CDE11G0921 Ceratophyllum demersum HOM05D006652 ORTHO05D008645 4.4e-92 342.0 278 61.9
SGA_v2.0_scaffold109G31132 Striga asiatica HOM05D006652 ORTHO05D008645 6.3e-91 338.2 406 47.5
AUR62038997 Chenopodium quinoa HOM05D006652 ORTHO05D008645 1.8e-85 320.1 265 61.9
Manes.13G137800 Manihot esculenta HOM05D006652 ORTHO05D008645 5.2e-85 318.5 227 67.4
TWI59G0297 Tripterygium wilfordii HOM05D006652 ORTHO05D008645 8.3e-83 311.2 227 68.3
Cc05_g08190 Coffea canephora HOM05D006652 ORTHO05D008645 9.2e-82 307.8 243 63.4
Cc05_g08160 Coffea canephora HOM05D006652 ORTHO05D008645 1.2e-81 307.4 227 65.6
MBI11_g19676_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 3.5e-81 305.8 290 54.1
SMO334G0043 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 1.7e-80 303.5 294 53.7
Pp3c3_7460 Physcomitrium patens HOM05D006652 ORTHO05D008645 1.2e-78 297.4 293 53.9
Mapoly0061s0036 Marchantia polymorpha HOM05D006652 ORTHO05D008645 1.0e-72 277.7 290 49.7
Zm00001eb307930 Zea mays HOM05D006652 ORTHO05D008645 3.2e-66 256.1 215 57.7
ClCG02G017930 Citrullus lanatus HOM05D006652 ORTHO05D008645 7.1e-66 255.0 250 54.4
DCAR_013062 Daucus carota HOM05D006652 ORTHO05D008645 5.1e-64 248.8 291 49.5
AagrBONN_evm.TU.Sc2ySwM_228.444 Anthoceros agrestis HOM05D006652 ORTHO05D008645 8.9e-61 238.0 223 55.6
CBR_g20425 Chara braunii HOM05D006652 ORTHO05D008645 1.4e-58 230.7 294 42.2
PGR142G0648 Punica granatum HOM05D006652 ORTHO05D008645 5.4e-58 228.8 215 56.3
MCO11G400 Micromonas commoda HOM05D006652 ORTHO05D008645 2.7e-57 226.5 294 43.5
TPR.G21861 Trifolium pratense HOM05D006652 ORTHO05D008645 1.1e-55 221.1 152 71.7
Zm00001eb127120 Zea mays HOM05D006652 ORTHO05D008645 3.6e-54 216.1 160 65.6
Mapoly0285s0004 Marchantia polymorpha HOM05D006652 ORTHO05D008645 3.1e-53 213.0 220 50.9
Cc00_g35820 Coffea canephora HOM05D006652 ORTHO05D008645 1.7e-51 207.2 155 64.5
PRCOL_00002204 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 3.8e-51 206.1 297 42.1
Ca_18889_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 4.9e-51 205.7 146 69.2
CBR_g20426 Chara braunii HOM05D006652 ORTHO05D008645 1.0e-48 198.0 361 36.3
arahy.Tifrunner.gnm1.ann1.MYHL2J Arachis hypogaea HOM05D006652 ORTHO05D008645 1.3e-46 191.0 142 67.6
MELO3C019759.2 Cucumis melo HOM05D006652 ORTHO05D008645 1.2e-41 174.5 146 58.9
Haze_13351 Corylus avellana HOM05D006652 ORTHO05D008645 1.0e-40 171.4 120 69.2
Zm00001eb155780 Zea mays HOM05D006652 ORTHO05D008645 1.3e-40 171.0 226 43.4
Zm00001eb202810 Zea mays HOM05D006652 ORTHO05D008645 5.1e-40 169.1 226 43.8
SMO118G0546 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 1.5e-36 157.5 289 33.2
Cre03.g200350 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 8.4e-35 151.8 308 33.1
Mapoly0050s0024 Marchantia polymorpha HOM05D006652 ORTHO05D008645 5.5e-34 149.1 283 33.6
SEGI_35274 Sequoiadendron giganteum HOM05D006652 ORTHO05D008645 2.7e-33 146.7 285 34.7
Cre06.g259401 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 4.6e-33 146.0 295 32.9
Pp3c17_23540 Physcomitrium patens HOM05D006652 ORTHO05D008645 6.0e-33 145.6 284 32.0
Zm00001eb272210 Zea mays HOM05D006652 ORTHO05D008645 3.0e-32 143.3 217 40.6
ECA234G0151 Erigeron canadensis HOM05D006652 ORTHO05D008645 1.6e-30 137.5 116 57.8
CBR_g34298 Chara braunii HOM05D006652 ORTHO05D008645 2.1e-30 137.1 293 32.8
Haze_13350 Corylus avellana HOM05D006652 ORTHO05D008645 3.7e-30 136.3 93 75.3
TPR.G21859 Trifolium pratense HOM05D006652 ORTHO05D008645 8.2e-30 135.2 139 56.1
AUR62024835 Chenopodium quinoa HOM05D006652 ORTHO05D008645 5.5e-26 122.5 136 50.0
PRCOL_00006996 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 1.8e-24 117.5 273 31.5
MCO08G076 Micromonas commoda HOM05D006652 ORTHO05D008645 3.0e-24 116.7 293 30.4
TPR.G21704 Trifolium pratense HOM05D006652 ORTHO05D008645 1.5e-23 114.4 110 55.5
Glyma.12G122501 Glycine max HOM05D006652 ORTHO05D008645 3.3e-23 113.2 87 72.4
AagrBONN_evm.TU.Sc2ySwM_117.2543 Anthoceros agrestis HOM05D006652 ORTHO05D008645 6.3e-22 109.0 180 38.9
Ca_18891_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 5.9e-20 102.4 56 78.6
Cc05_g08180 Coffea canephora HOM05D006652 ORTHO05D008645 3.9e-16 89.7 54 74.1
Cc05_g08150 Coffea canephora HOM05D006652 ORTHO05D008645 2.0e-15 87.4 54 72.2
Zm00001eb048070 Zea mays HOM05D001272 ORTHO05D001099 2.2e-11 73.9 54 63.0
PRCOL_00001996 Prasinoderma coloniale HOM05D006652 ORTHO05D028803 6.5e-11 72.4 261 24.1
Haze_13352 Corylus avellana HOM05D006652 ORTHO05D008645 1.4e-08 64.7 43 65.1
MCO15G420 Micromonas commoda HOM05D006652 ORTHO05D028803 2.3e-08 63.9 276 23.9
PRCOL_00002129 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 5.1e-08 62.8 282 25.5


User provided reference genes

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