Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G269200 Glycine max HOM05D002065 ORTHO05D002050 5.7e-124 447.6 224 100.0
Phvul.011G139900 Phaseolus vulgaris HOM05D002065 ORTHO05D002050 5.0e-72 275.0 213 67.6
VMungo1127G0373 Vigna mungo HOM05D002065 ORTHO05D002050 6.2e-70 268.1 211 66.8
Medtr4g081200 Medicago truncatula HOM05D002065 ORTHO05D002050 1.3e-56 223.8 229 55.0
Psat7g161480 Pisum sativum HOM05D002065 ORTHO05D002050 5.1e-56 221.9 228 55.3
TPR.G25922 Trifolium pratense HOM05D002065 ORTHO05D002050 4.7e-54 215.3 220 55.5
Lalb_Chr14g0366161 Lupinus albus HOM05D002065 ORTHO05D002050 2.4e-45 186.4 215 49.8
Lj3g0020040 Lotus japonicus HOM05D002065 ORTHO05D002050 3.9e-40 169.1 224 46.0
Psat5g251880 Pisum sativum HOM05D002065 ORTHO05D002050 1.2e-36 157.5 221 43.4
Ca_01751_v3 Cicer arietinum L. HOM05D002065 ORTHO05D002050 5.8e-36 155.2 203 44.8
Glyma.13G287500 Glycine max HOM05D002065 ORTHO05D002050 1.7e-35 153.7 213 44.6
arahy.Tifrunner.gnm1.ann1.TAH91K Arachis hypogaea HOM05D002065 ORTHO05D002050 8.4e-35 151.4 204 43.1
Glyma.12G214100 Glycine max HOM05D002065 ORTHO05D002050 2.3e-32 143.3 217 41.9
VMungo1080G1659 Vigna mungo HOM05D002065 ORTHO05D002050 1.9e-31 140.2 223 41.7
Medtr2g082990 Medicago truncatula HOM05D002065 ORTHO05D002050 3.3e-31 139.4 225 39.6
TPR.G36815 Trifolium pratense HOM05D002065 ORTHO05D002050 4.3e-31 139.0 195 40.5
Gohir.A01G074800 Gossypium hirsutum HOM05D002065 ORTHO05D002050 2.6e-28 129.8 192 44.3
Phvul.005G091900 Phaseolus vulgaris HOM05D002065 ORTHO05D002050 3.4e-28 129.4 216 41.2
Gorai.002G082700 Gossypium raimondii HOM05D002065 ORTHO05D002050 5.8e-28 128.6 192 43.8
Gohir.D01G061300 Gossypium hirsutum HOM05D002065 ORTHO05D002050 7.6e-28 128.3 192 43.2
MD03G1211100 Malus domestica HOM05D002065 ORTHO05D002050 7.6e-28 128.3 191 45.0
FAN21G3193 Fragaria x ananassa HOM05D002065 ORTHO05D002050 2.2e-27 126.7 204 39.7
FAN16G0462 Fragaria x ananassa HOM05D002065 ORTHO05D002050 6.5e-27 125.2 203 38.9
MD11G1225800 Malus domestica HOM05D002065 ORTHO05D002050 8.4e-27 124.8 191 42.4
RcHm_v2.0_Chr5g0037701 Rosa chinensis HOM05D002065 ORTHO05D002050 8.4e-27 124.8 195 39.5
MD03G1210900 Malus domestica HOM05D002065 ORTHO05D002050 1.9e-26 123.6 185 44.9
Duzib213G0394 Durio zibethinus HOM05D002065 ORTHO05D002050 2.5e-26 123.2 191 41.4
MSTRG.14416 Avicennia marina HOM05D002065 ORTHO05D002050 3.2e-26 122.9 219 34.7
FvH4_3g21890 Fragaria vesca HOM05D002065 ORTHO05D002050 3.2e-26 122.9 203 38.4
FAN11G3928 Fragaria x ananassa HOM05D002065 ORTHO05D002050 3.2e-26 122.9 203 38.4
Thecc.07G052100 Theobroma cacao HOM05D002065 ORTHO05D002050 3.2e-26 122.9 215 40.0
CARHR096380 Cardamine hirsuta HOM05D002065 ORTHO05D002050 4.2e-26 122.5 184 40.2
Atru.chr2.3214 Acer truncatum HOM05D002065 ORTHO05D002050 1.6e-25 120.6 224 37.1
TWI39G0180 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 3.5e-25 119.4 185 41.1
Duzib170G0757 Durio zibethinus HOM05D002065 ORTHO05D002050 1.0e-24 117.9 193 42.5
MD03G1211000 Malus domestica HOM05D002065 ORTHO05D002050 1.0e-24 117.9 186 43.5
RhsimUnG0253100 Rhododendron simsii HOM05D002065 ORTHO05D002050 1.3e-24 117.5 184 39.7
COL.COLO4_09575 Corchorus olitorius HOM05D002065 ORTHO05D002050 1.8e-24 117.1 192 42.7
BcaB04g19117 Brassica carinata HOM05D002065 ORTHO05D002050 3.9e-24 115.9 203 36.5
Migut.M01810 Erythranthe guttata HOM05D002065 ORTHO05D002050 3.9e-24 115.9 194 37.1
Ciclev10009510m.g Citrus clementina HOM05D002065 ORTHO05D002050 5.1e-24 115.5 187 39.6
Haze_09617 Corylus avellana HOM05D002065 ORTHO05D002050 8.7e-24 114.8 206 35.4
Manes.03G123200 Manihot esculenta HOM05D002065 ORTHO05D002050 8.7e-24 114.8 215 38.1
A03p41840 Brassica napus HOM05D002065 ORTHO05D002050 1.1e-23 114.4 203 36.9
THA.LOC104817885 Tarenaya hassleriana HOM05D002065 ORTHO05D002050 1.5e-23 114.0 199 38.2
BraA03t13337Z Brassica rapa HOM05D002065 ORTHO05D002050 1.9e-23 113.6 203 36.9
Prupe.4G204400 Prunus persica HOM05D002065 ORTHO05D002050 3.3e-23 112.8 189 41.3
BcaC01g03546 Brassica carinata HOM05D002065 ORTHO05D002050 4.3e-23 112.5 185 38.4
C03p51220 Brassica napus HOM05D002065 ORTHO05D002050 4.3e-23 112.5 185 38.4
BolC3t17412H Brassica oleracea HOM05D002065 ORTHO05D002050 4.3e-23 112.5 185 38.4
Cfa020411 Carpinus fangiana HOM05D002065 ORTHO05D002050 5.7e-23 112.1 197 36.0
Cfa020412 Carpinus fangiana HOM05D002065 ORTHO05D002050 5.7e-23 112.1 194 38.7
SalBow7G4713 Salvia bowleyana HOM05D002065 ORTHO05D002050 5.7e-23 112.1 183 42.1
MELO3C018104.2 Cucumis melo HOM05D002065 ORTHO05D002050 7.4e-23 111.7 184 37.0
AL3G34460 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 9.6e-23 111.3 191 35.1
Haze_09616 Corylus avellana HOM05D002065 ORTHO05D002050 1.3e-22 110.9 191 37.7
Thhalv10021500m.g Eutrema salsugineum HOM05D002065 ORTHO05D002050 1.3e-22 110.9 186 37.6
Cpa.g.c26548.3 Carica papaya HOM05D002065 ORTHO05D002050 2.1e-22 110.2 209 37.3
AT3G20600 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 2.8e-22 109.8 191 35.1
TAR629G2752 Trochodendron aralioides HOM05D002065 ORTHO05D002050 3.7e-22 109.4 196 37.2
Sp3g18610 Schrenkiella parvula HOM05D002065 ORTHO05D002050 4.8e-22 109.0 185 36.8
BcaC09g49003 Brassica carinata HOM05D002065 ORTHO05D002050 8.2e-22 108.2 186 36.6
BolC1t04321H Brassica oleracea HOM05D002065 ORTHO05D002050 8.2e-22 108.2 186 36.6
Solyc12g005230.3 Solanum lycopersicum HOM05D001540 ORTHO05D001520 8.2e-22 108.2 190 35.3
Carub.0003s2057 Capsella rubella HOM05D002065 ORTHO05D002050 1.1e-21 107.8 193 35.8
ClCG05G014750 Citrullus lanatus HOM05D002065 ORTHO05D002050 1.1e-21 107.8 184 37.5
CiPaw.11G184100 Carya illinoinensis HOM05D002065 ORTHO05D002050 1.4e-21 107.5 223 35.0
Sopen12g001210 Solanum pennellii HOM05D002065 ORTHO05D002050 1.4e-21 107.5 173 37.0
A01p34210 Brassica napus HOM05D002065 ORTHO05D002050 1.8e-21 107.1 186 36.0
BraA01t03521Z Brassica rapa HOM05D002065 ORTHO05D002050 1.8e-21 107.1 186 36.0
Manes.15G076400 Manihot esculenta HOM05D002065 ORTHO05D002050 2.4e-21 106.7 196 37.2
SalBow8G3023 Salvia bowleyana HOM05D002065 ORTHO05D002050 2.4e-21 106.7 183 39.3
SGA_v2.0_scaffold27G11640 Striga asiatica HOM05D002065 ORTHO05D002050 3.1e-21 106.3 190 36.3
BcaB04g20643 Brassica carinata HOM05D002065 ORTHO05D002050 4.1e-21 105.9 186 36.0
Sed0026241 Sechium edule HOM05D002065 ORTHO05D002050 4.1e-21 105.9 187 39.0
Hma1.2p1_1869F.1_g306050 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 5.3e-21 105.5 193 36.3
Lsat_1_v5_gn_3_120800 Lactuca sativa HOM05D002065 ORTHO05D002050 5.3e-21 105.5 188 34.6
DCAR_022527 Daucus carota HOM05D002065 ORTHO05D002050 6.9e-21 105.1 216 35.2
Gorai.013G163600 Gossypium raimondii HOM05D002065 ORTHO05D002050 6.9e-21 105.1 217 38.7
Oeu007632.1 Olea europaea HOM05D002065 ORTHO05D002050 9.0e-21 104.8 211 33.2
TWI38G0302 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 9.0e-21 104.8 184 37.5
Cc05_g13270 Coffea canephora HOM05D002065 ORTHO05D002050 1.5e-20 104.0 182 38.5
Actinidia09932 Actinidia chinensis HOM05D002065 ORTHO05D002050 2.0e-20 103.6 188 39.4
CsaV3_3G023120 Cucumis sativus L. HOM05D002065 ORTHO05D002050 2.6e-20 103.2 183 36.1
AL3G34450 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 3.4e-20 102.8 194 34.0
CANSAT64G1415 Cannabis sativa HOM05D002065 ORTHO05D002050 3.4e-20 102.8 216 34.3
Nn1g03652 Nelumbo nucifera HOM05D002065 ORTHO05D002050 4.5e-20 102.4 185 37.3
PGR083G2635 Punica granatum HOM05D002065 ORTHO05D002050 4.5e-20 102.4 213 36.6
Lsat_1_v5_gn_5_5781 Lactuca sativa HOM05D002065 ORTHO05D002050 5.9e-20 102.1 186 36.0
Duzib213G0251 Durio zibethinus HOM05D002065 ORTHO05D002050 1.3e-19 100.9 200 37.5
Aa31LG8G7410 Aethionema arabicum HOM05D002065 ORTHO05D002050 1.7e-19 100.5 191 37.7
Potri.011G133900 Populus trichocarpa HOM05D002065 ORTHO05D002050 2.2e-19 100.1 212 36.3
AT3G20590 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 2.9e-19 99.8 194 34.5
Nitab4.5_0000092g0090 Nicotiana tabacum HOM05D002065 ORTHO05D002050 2.9e-19 99.8 162 37.7
TAR626G1743 Trochodendron aralioides HOM05D002065 ORTHO05D002050 2.9e-19 99.8 190 34.7
QL08p013247 Quercus lobata HOM05D002065 ORTHO05D002050 5.0e-19 99.0 211 37.0
Aa31LG8G7400 Aethionema arabicum HOM05D002065 ORTHO05D002050 6.5e-19 98.6 188 35.1
EL10Ac4g07955 Beta vulgaris HOM05D002065 ORTHO05D002050 6.5e-19 98.6 192 37.0
PSO017G0621 Papaver somniferum HOM05D002065 ORTHO05D002050 6.5e-19 98.6 217 33.2
Aqoxy4G02007 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 1.1e-18 97.8 183 37.7
Oeu062613.1 Olea europaea HOM05D002065 ORTHO05D002050 1.1e-18 97.8 206 33.0
Lj8P166T75 Lonicera japonica HOM05D002065 ORTHO05D002050 3.2e-18 96.3 196 34.7
TAR626G0982 Trochodendron aralioides HOM05D002065 ORTHO05D002050 3.2e-18 96.3 201 34.3
Actinidia35318 Actinidia chinensis HOM05D000018 ORTHO05D001766 4.2e-18 95.9 191 38.2
Dinv40711 Davidia involucrata HOM05D002065 ORTHO05D001766 4.2e-18 95.9 195 37.4
MBI18_g44237_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 4.2e-18 95.9 219 37.0
Dinv22303 Davidia involucrata HOM05D002065 ORTHO05D002050 5.5e-18 95.5 175 36.6
Sabra16G0283800 Salix brachista HOM05D002065 ORTHO05D002050 7.2e-18 95.1 213 34.3
Eucgr.F00981 Eucalyptus grandis HOM05D002065 ORTHO05D002050 6.1e-17 92.0 167 37.7
Sp3g18640 Schrenkiella parvula HOM05D002065 ORTHO05D002050 7.9e-17 91.7 197 36.5
Sed0007986 Sechium edule HOM05D002065 ORTHO05D002050 7.9e-17 91.7 187 36.9
Sabra11G0120300 Salix brachista HOM05D002065 ORTHO05D002050 1.0e-16 91.3 205 35.1
Solyc01g006320.4 Solanum lycopersicum HOM05D002065 ORTHO05D002050 1.3e-16 90.9 174 33.3
Nn1g07007 Nelumbo nucifera HOM05D002065 ORTHO05D002050 3.0e-16 89.7 184 36.4
MBI18_g44238_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 3.9e-16 89.4 187 37.4
MBI18_g41997_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 6.7e-16 88.6 187 37.4
Prupe.6G166500 Prunus persica HOM05D002065 ORTHO05D002050 8.7e-16 88.2 148 39.9
PGSC0003DMG400032231 Solanum tuberosum HOM05D002065 ORTHO05D002050 1.1e-15 87.8 174 32.8
Carub.0003s2058 Capsella rubella HOM05D002065 ORTHO05D002050 1.5e-15 87.4 198 33.8
CAN.G140.7 Capsicum annuum HOM05D002065 ORTHO05D002050 2.5e-15 86.7 178 32.6
Oeu007631.2 Olea europaea HOM05D002065 ORTHO05D002050 2.5e-15 86.7 193 32.1
CiPaw.11G184300 Carya illinoinensis HOM05D002065 ORTHO05D002050 7.4e-15 85.1 185 33.0
Eucgr.F00979 Eucalyptus grandis HOM05D002065 ORTHO05D002050 1.3e-14 84.3 147 38.8
PSO170G3882 Papaver somniferum HOM05D002065 ORTHO05D002050 6.3e-14 82.0 173 32.9
Potri.001G418000 Populus trichocarpa HOM05D002065 ORTHO05D002050 6.3e-14 82.0 206 33.5
MBI02_g10994_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 8.2e-14 81.6 160 35.6
Hma1.2p1_1564F.1_g290830 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 1.1e-13 81.3 194 35.6
Sopen01g002320 Solanum pennellii HOM05D002065 ORTHO05D002050 2.4e-13 80.1 161 32.3
AUR62015652 Chenopodium quinoa HOM05D002065 ORTHO05D002050 9.0e-13 78.2 168 35.1
Hma1.2p1_1869F.1_g306060 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 5.9e-12 75.5 174 35.6
AUR62020549 Chenopodium quinoa HOM05D002065 ORTHO05D002050 7.7e-12 75.1 201 33.8
MBI18_g44236_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 1.0e-11 74.7 220 32.7
Oeu042915.1 Olea europaea HOM05D002065 ORTHO05D002050 2.9e-11 73.2 145 38.6
PSO500G0109 Papaver somniferum HOM05D002065 ORTHO05D002050 6.5e-11 72.0 171 31.0
FvH4_3g02720 Fragaria vesca HOM05D002065 ORTHO05D002050 1.9e-10 70.5 157 31.8
FAN21G3944 Fragaria x ananassa HOM05D002065 ORTHO05D002050 3.2e-10 69.7 157 31.8
QL05p075313 Quercus lobata HOM05D002065 ORTHO05D002050 3.2e-10 69.7 142 33.8
FAN25G0723 Fragaria x ananassa HOM05D002065 ORTHO05D002050 9.4e-10 68.2 187 29.9
CAN.G140.6 Capsicum annuum HOM05D002065 ORTHO05D002050 1.6e-09 67.4 114 34.2
EL10Ac4g07956 Beta vulgaris HOM05D002065 ORTHO05D002050 2.7e-09 66.6 191 32.5
Peaxi162Scf00192g00005 Petunia axillaris HOM05D002065 ORTHO05D002050 3.6e-09 66.2 153 30.1
C01p43600 Brassica napus HOM05D002065 ORTHO05D002050 6.1e-09 65.5 126 35.7
Oeu025507.1 Olea europaea HOM05D002065 ORTHO05D002050 1.0e-08 64.7 185 31.9
Oeu025506.1 Olea europaea HOM05D002065 ORTHO05D002050 1.4e-08 64.3 185 31.9
CARHR096390 Cardamine hirsuta HOM05D002065 ORTHO05D002050 1.8e-08 63.9 180 31.1
Sp3g18630 Schrenkiella parvula HOM05D002065 ORTHO05D002050 1.8e-08 63.9 128 35.9
Oeu025495.1 Olea europaea HOM05D002065 ORTHO05D002050 2.3e-08 63.5 185 31.9
Lj8C77T5 Lonicera japonica HOM05D002065 ORTHO05D002050 3.0e-08 63.2 164 28.7
Nitab4.5_0005041g0020 Nicotiana tabacum HOM05D002065 ORTHO05D002050 3.9e-08 62.8 140 30.0
ATR0794G125 Amborella trichopoda HOM05D002065 ORTHO05D002050 8.8e-08 61.6 171 32.7
Glyma.10G129900 Glycine max HOM05D002065 ORTHO05D002050 8.8e-08 61.6 150 36.0
Oeu025490.1 Olea europaea HOM05D002065 ORTHO05D002050 8.8e-08 61.6 185 31.4
ATR0794G057 Amborella trichopoda HOM05D002065 ORTHO05D002050 2.6e-07 60.1 147 32.0
Sc01g0007380 Simmondsia chinensis HOM05D002065 ORTHO05D002050 4.4e-07 59.3 183 28.4
PGSC0003DMG400025621 Solanum tuberosum HOM05D002065 ORTHO05D002050 5.7e-07 58.9 110 33.6
CiPaw.09G085400 Carya illinoinensis HOM05D002065 ORTHO05D002050 1.3e-06 57.8 136 33.8
Hma1.2p1_1564F.1_g290840 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 1.3e-06 57.8 107 33.6
DCAR_028154 Daucus carota HOM05D004864 ORTHO05D005393 3.7e-06 56.2 170 30.0
Ciclev10016810m.g Citrus clementina HOM05D002065 ORTHO05D002050 4.8e-06 55.8 138 31.2
Lj8C77T4 Lonicera japonica HOM05D002065 ORTHO05D002050 4.8e-06 55.8 201 27.4
Gohir.D13G145801 Gossypium hirsutum HOM05D002065 ORTHO05D002050 6.3e-06 55.5 65 43.1
SalBow7G3313 Salvia bowleyana HOM05D002065 ORTHO05D002050 8.2e-06 55.1 182 30.2


User provided reference genes

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