Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G267100 Glycine max HOM05D006930 ORTHO05D003473 1.6e-64 249.2 118 100.0
Glyma.07G028900 Glycine max HOM05D006930 ORTHO05D003473 8.9e-52 206.8 117 89.7
Glyma.08G213900 Glycine max HOM05D006930 ORTHO05D003473 1.9e-49 199.1 116 85.3
Phvul.010G157100 Phaseolus vulgaris HOM05D006930 ORTHO05D003473 9.2e-49 196.8 117 83.8
VMungo0331G0456 Vigna mungo HOM05D006930 ORTHO05D003473 4.6e-48 194.5 117 82.9
Lalb_Chr01g0012321 Lupinus albus HOM05D006930 ORTHO05D003473 1.5e-46 189.5 116 79.3
Psat7g257520 Pisum sativum HOM05D006930 ORTHO05D003473 2.5e-46 188.7 117 79.5
Ca_12521_v3 Cicer arietinum L. HOM05D006930 ORTHO05D003473 3.3e-46 188.3 117 80.3
TPR.G38661 Trifolium pratense HOM05D006930 ORTHO05D003473 3.3e-46 188.3 117 79.5
Medtr4g010000 Medicago truncatula HOM05D006930 ORTHO05D003473 3.1e-44 181.8 117 76.9
Lj3g0000775 Lotus japonicus HOM05D006930 ORTHO05D003473 3.4e-43 178.3 117 75.2
arahy.Tifrunner.gnm1.ann1.N35MHT Arachis hypogaea HOM05D000001 ORTHO05D003473 5.8e-43 177.6 117 76.9
arahy.Tifrunner.gnm1.ann1.UX2221 Arachis hypogaea HOM05D006930 ORTHO05D003473 5.8e-43 177.6 117 76.9
TWI12G0296 Tripterygium wilfordii HOM05D006930 ORTHO05D003473 1.7e-42 176.0 117 74.4
GSVIVG01017376001 Vitis vinifera HOM05D006930 ORTHO05D003473 4.1e-41 171.4 117 73.5
CAN.G1503.12 Capsicum annuum HOM05D006930 ORTHO05D003473 7.1e-41 170.6 116 70.7
Hma1.2p1_0017F.1_g011300 Hydrangea macrophylla HOM05D006930 ORTHO05D003473 7.1e-41 170.6 119 71.4
PGR031G3139 Punica granatum HOM05D006930 ORTHO05D003473 7.1e-41 170.6 117 72.6
Actinidia15746 Actinidia chinensis HOM05D006930 ORTHO05D003473 9.2e-41 170.2 117 70.9
Nitab4.5_0000373g0100 Nicotiana tabacum HOM05D006930 ORTHO05D003473 9.2e-41 170.2 116 73.3
Sabra01G0159100 Salix brachista HOM05D006930 ORTHO05D003473 1.2e-40 169.9 117 71.8
CiPaw.01G249700 Carya illinoinensis HOM05D006930 ORTHO05D003473 1.6e-40 169.5 117 71.8
Atru.chr1.2883 Acer truncatum HOM05D006930 ORTHO05D003473 2.1e-40 169.1 117 70.9
Cpa.g.sc167.11 Carica papaya HOM05D006930 ORTHO05D003473 2.7e-40 168.7 117 71.8
Manes.04G110900 Manihot esculenta HOM05D006930 ORTHO05D003473 2.7e-40 168.7 117 72.6
Aqoxy6G02939 Aquilegia oxysepala HOM05D006930 ORTHO05D003473 4.6e-40 167.9 117 71.8
PGSC0003DMG400028531 Solanum tuberosum HOM05D006930 ORTHO05D003473 4.6e-40 167.9 116 70.7
TAR383G0217 Trochodendron aralioides HOM05D006930 ORTHO05D003473 4.6e-40 167.9 117 72.6
CDE05G2138 Ceratophyllum demersum HOM05D006930 ORTHO05D003473 6.0e-40 167.5 117 72.6
Solyc06g068220.3 Solanum lycopersicum HOM05D006930 ORTHO05D003473 1.0e-39 166.8 116 69.8
Sopen06g025490 Solanum pennellii HOM05D006930 ORTHO05D003473 1.0e-39 166.8 116 69.8
Hma1.2p1_0017F.1_g011290 Hydrangea macrophylla HOM05D006930 ORTHO05D003473 1.3e-39 166.4 115 71.3
Eucgr.J03079 Eucalyptus grandis HOM05D006930 ORTHO05D003473 1.7e-39 166.0 115 70.4
Nitab4.5_0009670g0040 Nicotiana tabacum HOM05D006930 ORTHO05D003473 1.7e-39 166.0 116 71.6
Dinv30624 Davidia involucrata HOM05D006930 ORTHO05D003473 3.0e-39 165.2 117 70.1
Cfa001946 Carpinus fangiana HOM05D006930 ORTHO05D003473 3.9e-39 164.9 117 69.2
DCAR_025522 Daucus carota HOM05D006930 ORTHO05D003473 5.1e-39 164.5 117 70.9
Duzib160G0859 Durio zibethinus HOM05D006930 ORTHO05D003473 5.1e-39 164.5 117 69.2
Ah.01g020490 Amaranthus hybridus HOM05D006930 ORTHO05D003473 6.6e-39 164.1 112 69.6
MSTRG.11152 Avicennia marina HOM05D006930 ORTHO05D003473 6.6e-39 164.1 117 69.2
AUR62016320 Chenopodium quinoa HOM05D006930 ORTHO05D003473 6.6e-39 164.1 117 68.4
Oeu058022.1 Olea europaea HOM05D006930 ORTHO05D003473 6.6e-39 164.1 117 70.9
Rhsim08G0211400 Rhododendron simsii HOM05D006930 ORTHO05D003473 6.6e-39 164.1 117 68.4
CSS0042945 Camellia sinensis var. sinensis HOM05D006930 ORTHO05D003473 1.1e-38 163.3 115 69.6
HanXRQChr02g0033441 Helianthus annuus HOM05D006930 ORTHO05D003473 1.1e-38 163.3 117 68.4
Lj5C74T12 Lonicera japonica HOM05D006930 ORTHO05D003473 1.1e-38 163.3 120 65.0
Potri.001G201500 Populus trichocarpa HOM05D006930 ORTHO05D003473 1.1e-38 163.3 117 70.1
Sc12g0008800 Simmondsia chinensis HOM05D006930 ORTHO05D003473 1.5e-38 162.9 117 68.4
SGA_v2.0_scaffold5G02718 Striga asiatica HOM05D006930 ORTHO05D003473 1.9e-38 162.5 117 70.1
QL05p031513 Quercus lobata HOM05D006930 ORTHO05D003473 2.5e-38 162.2 116 66.4
QL05p031771 Quercus lobata HOM05D006930 ORTHO05D003473 2.5e-38 162.2 116 66.4
Ciclev10026291m.g Citrus clementina HOM05D006930 ORTHO05D003473 3.3e-38 161.8 116 68.1
Cc04_g04550 Coffea canephora HOM05D006930 ORTHO05D003473 3.3e-38 161.8 117 68.4
Lsat_1_v5_gn_1_34201 Lactuca sativa HOM05D006930 ORTHO05D003473 3.3e-38 161.8 117 66.7
Nn8g39559 Nelumbo nucifera HOM05D006930 ORTHO05D003473 3.3e-38 161.8 117 70.9
CANSAT56G2501 Cannabis sativa HOM05D006930 ORTHO05D003473 7.3e-38 160.6 117 69.2
Migut.I00748 Erythranthe guttata HOM05D006930 ORTHO05D003473 7.3e-38 160.6 115 67.8
Gohir.A09G085700 Gossypium hirsutum HOM05D006930 ORTHO05D003473 7.3e-38 160.6 117 67.5
Gohir.D09G085700 Gossypium hirsutum HOM05D006930 ORTHO05D003473 7.3e-38 160.6 117 67.5
Gorai.006G101700 Gossypium raimondii HOM05D006930 ORTHO05D003473 7.3e-38 160.6 117 67.5
MELO3C023431.2 Cucumis melo HOM05D006930 ORTHO05D003473 1.2e-37 159.8 117 68.4
COL.COLO4_11902 Corchorus olitorius HOM05D006930 ORTHO05D003473 1.6e-37 159.5 117 68.4
SalBow2G2804 Salvia bowleyana HOM05D006930 ORTHO05D003473 1.6e-37 159.5 117 67.5
EL10Ac9g21885 Beta vulgaris HOM05D006930 ORTHO05D003473 2.1e-37 159.1 117 65.8
Haze_16581 Corylus avellana HOM05D006930 ORTHO05D003473 2.8e-37 158.7 148 56.8
CsaV3_7G032270 Cucumis sativus L. HOM05D006930 ORTHO05D003473 2.8e-37 158.7 117 68.4
ECA247G2391 Erigeron canadensis HOM05D006930 ORTHO05D003473 2.8e-37 158.7 117 65.8
MD17G1214900 Malus domestica HOM05D006930 ORTHO05D003473 2.8e-37 158.7 117 66.7
PSO170G4876 Papaver somniferum HOM05D006930 ORTHO05D003473 4.7e-37 157.9 117 67.5
Thecc.06G031000 Theobroma cacao HOM05D006930 ORTHO05D003473 4.7e-37 157.9 117 66.7
ATR0800G158 Amborella trichopoda HOM05D006930 ORTHO05D003473 8.1e-37 157.1 115 66.1
Carub.0001s4147 Capsella rubella HOM05D006930 ORTHO05D003473 8.1e-37 157.1 117 65.0
Hund06550 Selenicereus undatus HOM05D006930 ORTHO05D003473 1.4e-36 156.4 117 64.1
THA.LOC104818013 Tarenaya hassleriana HOM05D006930 ORTHO05D003473 1.4e-36 156.4 117 64.1
AL1G60760 Arabidopsis lyrata HOM05D006930 ORTHO05D003473 1.8e-36 156.0 117 64.1
Os04g0644600 Oryza sativa ssp. japonica HOM05D006930 ORTHO05D003473 1.8e-36 156.0 117 66.7
CARHR042610 Cardamine hirsuta HOM05D006930 ORTHO05D003473 2.3e-36 155.6 117 65.0
FvH4_6g29410 Fragaria vesca HOM05D006930 ORTHO05D003473 2.3e-36 155.6 117 65.0
FAN14G4596 Fragaria x ananassa HOM05D006930 ORTHO05D003473 2.3e-36 155.6 117 65.0
RcHm_v2.0_Chr2g0134871 Rosa chinensis HOM05D006930 ORTHO05D003473 2.3e-36 155.6 117 65.8
AT1G52510 Arabidopsis thaliana HOM05D006930 ORTHO05D003473 3.1e-36 155.2 117 64.1
Prupe.3G090600 Prunus persica HOM05D006930 ORTHO05D003473 3.1e-36 155.2 117 65.0
Sed0010605 Sechium edule HOM05D006930 ORTHO05D003473 1.2e-35 153.3 117 65.0
Sp1g39060 Schrenkiella parvula HOM05D006930 ORTHO05D003473 1.5e-35 152.9 117 63.2
ClCG09G003040 Citrullus lanatus HOM05D006930 ORTHO05D003473 2.0e-35 152.5 117 66.7
Thhalv10011571m.g Eutrema salsugineum HOM05D006930 ORTHO05D003473 2.0e-35 152.5 117 63.2
BcaB02g10987 Brassica carinata HOM05D006930 ORTHO05D003473 7.6e-35 150.6 117 62.4
A05p18960 Brassica napus HOM05D006930 ORTHO05D003473 7.6e-35 150.6 117 62.4
BraA05t20793Z Brassica rapa HOM05D006930 ORTHO05D003473 7.6e-35 150.6 117 62.4
Aa31LG10G2490 Aethionema arabicum HOM05D006930 ORTHO05D003473 1.3e-34 149.8 117 60.7
BcaC08g43999 Brassica carinata HOM05D006930 ORTHO05D003473 1.7e-34 149.4 117 61.5
BolC6t36582H Brassica oleracea HOM05D006930 ORTHO05D003473 1.7e-34 149.4 117 62.4
TAR383G0337 Trochodendron aralioides HOM05D006930 ORTHO05D003473 4.9e-34 147.9 104 72.1
HPP92_017276 Vanilla planifolia HOM05D006930 ORTHO05D003473 8.4e-34 147.1 117 65.8
unitig_744.g24453 Utricularia gibba HOM05D006930 ORTHO05D003473 1.1e-33 146.7 115 62.6
Zm00001eb432000 Zea mays HOM05D006930 ORTHO05D003473 9.2e-33 143.7 117 60.7
Peaxi162Scf00207g00642 Petunia axillaris HOM05D006930 ORTHO05D003473 1.3e-31 139.8 103 69.9
SEGI_00440 Sequoiadendron giganteum HOM05D006930 ORTHO05D003473 6.6e-31 137.5 115 59.1
vmacro19013 Vaccinium macrocarpon HOM05D006930 ORTHO05D003473 7.3e-30 134.0 108 59.3
FAN05G3255 Fragaria x ananassa HOM05D006930 ORTHO05D003473 2.8e-29 132.1 103 64.1
SMO348G0075 Selaginella moellendorffii HOM05D006930 ORTHO05D003473 2.8e-29 132.1 121 57.9
FAN09G1771 Fragaria x ananassa HOM05D006930 ORTHO05D003473 3.6e-29 131.7 103 64.1
C06p14040 Brassica napus HOM05D006930 ORTHO05D003473 6.2e-29 131.0 104 60.6
AUR62011504 Chenopodium quinoa HOM05D006930 ORTHO05D003473 8.1e-29 130.6 90 66.7
Mapoly0030s0015 Marchantia polymorpha HOM05D006930 ORTHO05D003473 3.5e-24 115.2 116 50.0
Pp3c17_3830 Physcomitrium patens HOM05D006930 ORTHO05D003473 4.6e-24 114.8 116 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4265 Anthoceros agrestis HOM05D006930 ORTHO05D003473 6.0e-24 114.4 117 50.4
AagrBONN_evm.TU.Sc2ySwM_228.4270 Anthoceros agrestis HOM05D006930 ORTHO05D003473 6.0e-24 114.4 117 50.4
CBR_g16002 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-19 99.0 116 46.6
Actinidia01732 Actinidia chinensis HOM05D006930 ORTHO05D003473 1.1e-17 93.6 70 64.3
FAN03G0865 Fragaria x ananassa HOM05D001649 ORTHO05D002915 2.3e-15 85.9 47 76.6
Mapoly0005s0133 Marchantia polymorpha HOM05D007239 ORTHO05D003473 9.3e-09 63.9 115 33.0
Pp3c2_38210 Physcomitrium patens HOM05D007239 ORTHO05D003473 9.6e-06 53.9 112 33.9


User provided reference genes

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