Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 1.2e-58 229.6 111 100.0
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 1.1e-24 116.7 59 93.2
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 5.6e-24 114.4 61 88.5
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.8e-23 112.1 61 85.2
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 3.7e-23 111.7 57 91.2
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.2e-23 110.9 61 85.2
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 8.2e-23 110.5 61 85.2
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 1.1e-22 110.2 61 85.2
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 2.4e-22 109.0 64 78.1
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 4.0e-22 108.2 61 80.3
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 5.3e-22 107.8 61 80.3
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 5.3e-22 107.8 63 79.4
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 5.3e-22 107.8 63 79.4
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 5.3e-22 107.8 61 82.0
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 6.9e-22 107.5 61 82.0
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 6.9e-22 107.5 63 76.2
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 6.9e-22 107.5 113 48.7
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 6.9e-22 107.5 54 90.7
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 9.0e-22 107.1 54 90.7
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.5e-21 106.3 54 88.9
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.5e-21 106.3 57 86.0
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 2.0e-21 105.9 63 77.8
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.6e-21 105.5 61 80.3
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 2.6e-21 105.5 61 80.3
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 3.4e-21 105.1 61 78.7
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 3.4e-21 105.1 57 84.2
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 3.4e-21 105.1 72 66.7
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 4.5e-21 104.8 56 85.7
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.5e-21 104.8 66 75.8
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 4.5e-21 104.8 57 84.2
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 5.8e-21 104.4 61 78.7
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 5.8e-21 104.4 61 78.7
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 7.6e-21 104.0 61 78.7
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.6e-21 104.0 61 78.7
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 7.6e-21 104.0 61 78.7
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 7.6e-21 104.0 61 78.7
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 7.6e-21 104.0 98 53.1
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.0e-20 103.6 61 77.0
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.0e-20 103.6 63 76.2
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 1.0e-20 103.6 54 87.0
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.0e-20 103.6 54 85.2
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.0e-20 103.6 54 85.2
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.0e-20 103.6 54 85.2
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.0e-20 103.6 63 76.2
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 1.0e-20 103.6 63 76.2
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.3e-20 103.2 66 74.2
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 1.3e-20 103.2 55 87.3
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 1.3e-20 103.2 55 87.3
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 1.7e-20 102.8 61 78.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.7e-20 102.8 54 85.2
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 2.2e-20 102.4 61 75.4
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 2.2e-20 102.4 54 85.2
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 2.2e-20 102.4 54 85.2
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 2.2e-20 102.4 54 85.2
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 2.2e-20 102.4 63 77.8
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 2.2e-20 102.4 61 75.4
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 2.2e-20 102.4 61 75.4
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.2e-20 102.4 61 78.7
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.2e-20 102.4 54 87.0
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 2.9e-20 102.1 61 78.7
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 2.9e-20 102.1 54 83.3
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.9e-20 102.1 61 77.0
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 3.8e-20 101.7 61 77.0
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 4.9e-20 101.3 63 76.2
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 4.9e-20 101.3 61 73.8
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 4.9e-20 101.3 61 77.0
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 6.5e-20 100.9 54 83.3
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 6.5e-20 100.9 61 75.4
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 8.4e-20 100.5 61 77.0
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 8.4e-20 100.5 54 85.2
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 8.4e-20 100.5 66 72.7
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 8.4e-20 100.5 61 73.8
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 1.1e-19 100.1 63 71.4
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.4e-19 99.8 53 84.9
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.9e-19 99.4 54 85.2
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.9e-19 99.4 61 75.4
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 2.5e-19 99.0 109 45.9
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.5e-19 99.0 61 75.4
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.5e-19 99.0 54 83.3
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.2e-19 98.2 54 79.6
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.2e-19 98.2 61 72.1
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 4.2e-19 98.2 61 78.7
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 4.2e-19 98.2 54 81.5
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 5.5e-19 97.8 54 81.5
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 5.5e-19 97.8 61 75.4
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 7.1e-19 97.4 67 68.7
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 7.1e-19 97.4 55 78.2
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 7.1e-19 97.4 56 78.6
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 7.1e-19 97.4 56 78.6
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 7.1e-19 97.4 56 78.6
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 7.1e-19 97.4 62 71.0
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 9.3e-19 97.1 59 72.9
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 9.3e-19 97.1 61 73.8
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 9.3e-19 97.1 55 78.2
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 9.3e-19 97.1 55 78.2
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 9.3e-19 97.1 61 70.5
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 1.2e-18 96.7 63 71.4
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 1.2e-18 96.7 63 71.4
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.2e-18 96.7 61 70.5
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.2e-18 96.7 61 70.5
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 1.2e-18 96.7 61 70.5
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.2e-18 96.7 61 70.5
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.2e-18 96.7 61 70.5
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.2e-18 96.7 61 70.5
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.2e-18 96.7 61 70.5
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.6e-18 96.3 61 75.4
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.6e-18 96.3 54 77.8
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 1.6e-18 96.3 61 72.1
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 2.1e-18 95.9 54 81.5
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 2.7e-18 95.5 55 76.4
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 2.7e-18 95.5 55 76.4
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 2.7e-18 95.5 55 76.4
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 2.7e-18 95.5 55 76.4
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 2.7e-18 95.5 63 69.8
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 3.5e-18 95.1 61 75.4
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 3.5e-18 95.1 55 76.4
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 3.5e-18 95.1 55 76.4
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 3.5e-18 95.1 55 76.4
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 3.5e-18 95.1 55 76.4
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 3.5e-18 95.1 51 86.3
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 3.5e-18 95.1 52 82.7
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 4.6e-18 94.7 54 79.6
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 4.6e-18 94.7 61 73.8
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 6.0e-18 94.4 109 46.8
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 7.9e-18 94.0 55 74.5
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 7.9e-18 94.0 55 74.5
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 7.9e-18 94.0 55 74.5
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 7.9e-18 94.0 55 74.5
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.8e-17 92.8 47 95.7
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 3.0e-17 92.0 61 72.1
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 5.7e-16 87.8 56 66.1
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 8.2e-15 84.0 55 67.3
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 1.8e-14 82.8 56 58.9
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 4.1e-14 81.6 53 66.0
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 6.9e-14 80.9 53 64.2
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 9.0e-14 80.5 50 78.0
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 9.0e-14 80.5 50 78.0
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.5e-13 78.2 48 79.2
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 4.5e-13 78.2 48 75.0
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 4.5e-13 78.2 41 85.4
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.6e-13 77.4 48 75.0
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 5.0e-12 74.7 71 54.9
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 6.5e-12 74.3 48 70.8
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.6e-10 69.7 50 62.0
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 2.1e-10 69.3 43 72.1
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 2.7e-10 68.9 55 69.1
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 4.6e-10 68.2 67 50.7
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.0e-09 67.0 63 49.2
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.8e-09 66.2 52 55.8
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 1.8e-09 66.2 35 88.6
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 2.5e-08 62.4 48 66.7


User provided reference genes

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