Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G258800 Glycine max HOM05D006336 ORTHO05D007819 1.7e-70 269.2 137 100.0
Glyma.17G220200 Glycine max HOM05D006336 ORTHO05D007819 2.3e-51 205.7 232 54.7
Phvul.001G044100 Phaseolus vulgaris HOM05D006336 ORTHO05D007819 2.6e-47 192.2 232 50.4
VMungo0647G1288 Vigna mungo HOM05D006336 ORTHO05D007819 3.4e-47 191.8 232 51.3
Lj5g0013864 Lotus japonicus HOM05D006336 ORTHO05D007819 8.8e-43 177.2 232 47.0
arahy.Tifrunner.gnm1.ann1.6DI6VD Arachis hypogaea HOM05D006336 ORTHO05D007819 1.7e-38 162.9 237 43.9
Lalb_Chr24g0393711 Lupinus albus HOM05D006336 ORTHO05D007819 1.7e-38 162.9 233 44.2
arahy.Tifrunner.gnm1.ann1.YUGK7S Arachis hypogaea HOM05D006336 ORTHO05D007819 3.8e-38 161.8 235 44.3
Ca_13088_v3 Cicer arietinum L. HOM05D006336 ORTHO05D007819 3.8e-38 161.8 232 44.0
Psat6g024200 Pisum sativum HOM05D006336 ORTHO05D007819 3.9e-35 151.8 232 42.2
Medtr1g014730 Medicago truncatula HOM05D006336 ORTHO05D007819 7.0e-32 141.0 232 39.2
Aqoxy7G04150 Aquilegia oxysepala HOM05D006336 ORTHO05D007819 5.9e-31 137.9 232 39.7
TPR.G38941 Trifolium pratense HOM05D006336 ORTHO05D007819 2.9e-30 135.6 230 40.9
Nn6g35635 Nelumbo nucifera HOM05D006336 ORTHO05D007819 1.4e-29 133.3 232 39.7
TAR636G2611 Trochodendron aralioides HOM05D006336 ORTHO05D007819 2.5e-29 132.5 232 38.8
Sp5g17620 Schrenkiella parvula HOM05D006336 ORTHO05D007819 9.4e-29 130.6 231 38.1
CARHR098720 Cardamine hirsuta HOM05D006336 ORTHO05D007819 4.7e-28 128.3 219 38.8
Manes.03G055500 Manihot esculenta HOM05D006336 ORTHO05D007819 4.7e-28 128.3 241 36.9
AL5G21500 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 8.0e-28 127.5 228 36.8
Dinv09419 Davidia involucrata HOM05D006336 ORTHO05D007819 8.0e-28 127.5 238 39.1
AT3G43540 Arabidopsis thaliana HOM05D006336 ORTHO05D007819 1.8e-27 126.3 217 37.8
Carub.0005s0929 Capsella rubella HOM05D006336 ORTHO05D007819 2.3e-27 125.9 228 36.8
MELO3C016932.2 Cucumis melo HOM05D006336 ORTHO05D007819 2.3e-27 125.9 232 36.6
CsaV3_4G036230 Cucumis sativus L. HOM05D006336 ORTHO05D007819 5.2e-27 124.8 232 36.6
C03p68560 Brassica napus HOM05D006336 ORTHO05D007819 8.8e-27 124.0 217 37.8
ClCG05G015960 Citrullus lanatus HOM05D006336 ORTHO05D007819 1.1e-26 123.6 232 36.6
Rhsim03G0050100 Rhododendron simsii HOM05D006336 ORTHO05D007819 1.1e-26 123.6 232 37.9
A06p22570 Brassica napus HOM05D006336 ORTHO05D007819 1.5e-26 123.2 217 37.8
BraA06t25331Z Brassica rapa HOM05D006336 ORTHO05D007819 1.5e-26 123.2 217 37.8
Eucgr.C03178 Eucalyptus grandis HOM05D006336 ORTHO05D007819 2.0e-26 122.9 242 37.2
Aa31LG4G13380 Aethionema arabicum HOM05D006336 ORTHO05D007819 4.4e-26 121.7 219 38.8
MBI13_g01670_MAGBIO Magnolia biondii HOM05D006336 ORTHO05D007819 4.4e-26 121.7 240 35.8
Sed0027870 Sechium edule HOM05D006336 ORTHO05D007819 4.4e-26 121.7 232 35.8
TWI32G0525 Tripterygium wilfordii HOM05D006336 ORTHO05D007819 5.7e-26 121.3 241 36.9
BcaB01g01223 Brassica carinata HOM05D006336 ORTHO05D007819 7.4e-26 120.9 217 37.3
Atru.chr7.1812 Acer truncatum HOM05D006336 ORTHO05D007819 9.7e-26 120.6 217 37.8
BcaC01g02096 Brassica carinata HOM05D006336 ORTHO05D007819 9.7e-26 120.6 217 37.3
BolC3t19114H Brassica oleracea HOM05D006336 ORTHO05D007819 9.7e-26 120.6 217 37.3
Cpa.g.sc82.21 Carica papaya HOM05D006336 ORTHO05D007819 9.7e-26 120.6 238 36.1
Thhalv10002575m.g Eutrema salsugineum HOM05D006336 ORTHO05D007819 9.7e-26 120.6 222 38.3
TAR624G1124 Trochodendron aralioides HOM05D006336 ORTHO05D007819 9.7e-26 120.6 211 38.4
COL.COLO4_21171 Corchorus olitorius HOM05D006336 ORTHO05D007819 1.7e-25 119.8 219 36.5
CSS0028971 Camellia sinensis var. sinensis HOM05D006336 ORTHO05D007819 2.2e-25 119.4 217 38.2
CANSAT25G0260 Cannabis sativa HOM05D006336 ORTHO05D007819 2.2e-25 119.4 217 37.3
Cfa017842 Carpinus fangiana HOM05D006336 ORTHO05D007819 2.2e-25 119.4 235 36.6
PGR044G0762 Punica granatum HOM05D006336 ORTHO05D007819 2.8e-25 119.0 230 35.7
Duzib187G1166 Durio zibethinus HOM05D006336 ORTHO05D007819 3.7e-25 118.6 218 36.7
FvH4_2g37050 Fragaria vesca HOM05D006336 ORTHO05D007819 6.3e-25 117.9 234 36.3
FAN27G0198 Fragaria x ananassa HOM05D006336 ORTHO05D007819 8.2e-25 117.5 234 36.3
Potri.006G217700 Populus trichocarpa HOM05D006336 ORTHO05D007819 2.4e-24 115.9 213 37.1
PSO135G0459 Papaver somniferum HOM05D006336 ORTHO05D007819 3.1e-24 115.5 232 36.2
Thecc.09G066700 Theobroma cacao HOM05D006336 ORTHO05D007819 7.0e-24 114.4 216 36.1
GSVIVG01035507001 Vitis vinifera HOM05D006336 ORTHO05D007819 7.0e-24 114.4 232 35.8
Dinv37442 Davidia involucrata HOM05D006336 ORTHO05D007819 1.2e-23 113.6 232 35.8
RcHm_v2.0_Chr6g0304731 Rosa chinensis HOM05D006336 ORTHO05D007819 1.6e-23 113.2 231 36.4
THA.LOC104799597 Tarenaya hassleriana HOM05D006336 ORTHO05D007819 2.6e-23 112.5 219 35.6
CiPaw.13G138600 Carya illinoinensis HOM05D006336 ORTHO05D007819 3.5e-23 112.1 217 36.4
Migut.A00484 Erythranthe guttata HOM05D006336 ORTHO05D007819 3.5e-23 112.1 217 35.5
Gohir.D06G080900 Gossypium hirsutum HOM05D006336 ORTHO05D007819 4.5e-23 111.7 222 34.2
Gorai.010G094300 Gossypium raimondii HOM05D006336 ORTHO05D007819 4.5e-23 111.7 222 34.2
MD08G1047000 Malus domestica HOM05D006336 ORTHO05D007819 5.9e-23 111.3 213 37.1
Gohir.A06G081300 Gossypium hirsutum HOM05D006336 ORTHO05D007819 1.7e-22 109.8 218 34.4
Hma1.2p1_0262F.1_g105216 Hydrangea macrophylla HOM05D006336 ORTHO05D007819 2.9e-22 109.0 216 37.0
HanXRQChr03g0084651 Helianthus annuus HOM05D006336 ORTHO05D007819 8.5e-22 107.5 236 35.6
ECA240G3698 Erigeron canadensis HOM05D006336 ORTHO05D007819 1.1e-21 107.1 237 35.0
Sabra06G0167900 Salix brachista HOM05D006336 ORTHO05D007819 1.9e-21 106.3 257 33.5
MSTRG.11848 Avicennia marina HOM05D006336 ORTHO05D007819 2.5e-21 105.9 217 32.7
unitig_32.g10956 Utricularia gibba HOM05D006336 ORTHO05D007819 5.5e-21 104.8 218 33.9
Lsat_1_v5_gn_6_74301 Lactuca sativa HOM05D006336 ORTHO05D007819 9.4e-21 104.0 217 35.5
Oeu047793.1 Olea europaea HOM05D006336 ORTHO05D007819 1.2e-20 103.6 217 32.7
ATR0681G177 Amborella trichopoda HOM05D006336 ORTHO05D007819 3.6e-20 102.1 231 32.0
CAN.G22.30 Capsicum annuum HOM05D006336 ORTHO05D007819 4.7e-20 101.7 234 32.9
PGSC0003DMG400020818 Solanum tuberosum HOM05D006336 ORTHO05D007819 6.1e-20 101.3 232 32.8
SGA_v2.0_scaffold89G27365 Striga asiatica HOM05D006336 ORTHO05D007819 6.1e-20 101.3 218 33.9
vmacro07660 Vaccinium macrocarpon HOM05D006336 ORTHO05D007819 6.1e-20 101.3 288 31.2
Lj8C369G2 Lonicera japonica HOM05D006336 ORTHO05D007819 8.0e-20 100.9 211 35.5
EL10Ac5g11099 Beta vulgaris HOM05D006336 ORTHO05D007819 1.0e-19 100.5 210 33.8
PGSC0003DMG400020816 Solanum tuberosum HOM05D006336 ORTHO05D007819 1.0e-19 100.5 232 32.8
Ah.11g048000 Amaranthus hybridus HOM05D006336 ORTHO05D007819 1.4e-19 100.1 210 33.3
Sopen08g023730 Solanum pennellii HOM05D006336 ORTHO05D007819 1.8e-19 99.8 218 33.0
SalBow4G0695 Salvia bowleyana HOM05D006336 ORTHO05D007819 2.3e-19 99.4 215 34.4
Zm00001eb313900 Zea mays HOM05D006336 ORTHO05D007819 3.0e-19 99.0 215 32.6
DCAR_002185 Daucus carota HOM05D006336 ORTHO05D007819 4.0e-19 98.6 233 32.2
Sc04g0003070 Simmondsia chinensis HOM05D006336 ORTHO05D007819 5.2e-19 98.2 242 32.6
Nitab4.5_0008763g0010 Nicotiana tabacum HOM05D006336 ORTHO05D007819 6.8e-19 97.8 216 32.9
Prupe.1G401200 Prunus persica HOM05D006336 ORTHO05D007819 9.7e-18 94.0 103 54.4
CDE05G3496 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 2.7e-15 85.9 108 44.4
Hund02606 Selenicereus undatus HOM05D006336 ORTHO05D007819 1.3e-14 83.6 211 31.3
Cc08_g04580 Coffea canephora HOM05D006336 ORTHO05D007819 8.5e-14 80.9 97 45.4
CDE05G3418 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 3.2e-13 79.0 103 40.8
Hma1.2p1_1969F.1_g309520 Hydrangea macrophylla HOM05D006336 ORTHO05D007819 2.1e-12 76.3 60 65.0
Lsat_1_v5_gn_6_25780 Lactuca sativa HOM05D006336 ORTHO05D007819 1.4e-11 73.6 177 32.8
Ciclev10009629m.g Citrus clementina HOM05D006336 ORTHO05D007819 1.2e-10 70.5 66 54.5
Ah.01g016210 Amaranthus hybridus HOM05D006336 ORTHO05D007819 1.5e-10 70.1 106 38.7
Cc08_g04520 Coffea canephora HOM05D006336 ORTHO05D007819 1.5e-10 70.1 44 70.5
Psat6g117360 Pisum sativum HOM05D002321 ORTHO05D007292 1.5e-10 70.1 47 74.5
Solyc08g075100.4 Solanum lycopersicum HOM05D006336 ORTHO05D007819 2.6e-10 69.3 59 59.3
AUR62021599 Chenopodium quinoa HOM05D006336 ORTHO05D007819 5.7e-10 68.2 66 48.5
Psat2g081640 Pisum sativum HOM05D003172 ORTHO05D003708 9.8e-10 67.4 47 70.2
HPP92_019279 Vanilla planifolia HOM05D006336 ORTHO05D007819 9.8e-10 67.4 192 28.1
Nitab4.5_0024082g0010 Nicotiana tabacum HOM05D006336 ORTHO05D007819 1.7e-09 66.6 43 69.8
Peaxi162Scf00014g01816 Petunia axillaris HOM05D006336 ORTHO05D007819 1.7e-09 66.6 58 53.4
Carub.0251s0001 Capsella rubella HOM05D006336 ORTHO05D007819 2.8e-09 65.9 58 58.6
HPP92_019317 Vanilla planifolia HOM05D006336 ORTHO05D007819 3.7e-09 65.5 58 55.2
Psat7g236400 Pisum sativum HOM05D002716 ORTHO05D003324 4.8e-09 65.1 53 62.3
Cc08_g04560 Coffea canephora HOM05D006336 ORTHO05D007819 1.1e-08 63.9 66 45.5
Haze_18366 Corylus avellana HOM05D006336 ORTHO05D007819 1.1e-08 63.9 60 60.0
Actinidia27818 Actinidia chinensis HOM05D006336 ORTHO05D007819 1.8e-08 63.2 58 56.9
Os09g0436900 Oryza sativa ssp. japonica HOM05D006336 ORTHO05D007819 2.4e-08 62.8 40 67.5
AUR62008497 Chenopodium quinoa HOM05D006336 ORTHO05D007819 4.5e-07 58.5 37 75.7
AL8G10080 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 1.3e-06 57.0 54 51.9
CSS0044626 Camellia sinensis var. sinensis HOM05D006336 ORTHO05D007819 2.3e-06 56.2 36 75.0


User provided reference genes

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