Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 5.1e-38 160.6 82 100.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.5e-29 131.7 82 86.6
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.6e-28 129.0 82 84.1
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 5.4e-24 114.0 82 76.8
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 9.3e-24 113.2 82 76.8
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.5e-21 105.9 80 73.8
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 9.6e-21 103.2 72 76.4
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 8.1e-20 100.1 80 70.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 3.1e-19 98.2 80 68.8
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 6.9e-19 97.1 73 72.6
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.0e-17 93.2 73 67.1
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.7e-17 92.4 73 67.1
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 8.4e-17 90.1 79 65.8
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 2.5e-16 88.6 74 63.5
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.2e-15 86.3 73 63.0
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 3.5e-15 84.7 66 66.7
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 3.5e-15 84.7 66 66.7
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.3e-14 82.8 73 61.6
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 1.8e-14 82.4 73 61.6
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.8e-14 82.4 76 59.2
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 3.0e-14 81.6 73 60.3
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 3.0e-14 81.6 73 60.3
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 5.1e-14 80.9 73 60.3
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 8.7e-14 80.1 73 58.9
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-13 79.7 75 60.0
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.1e-13 79.7 73 58.9
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.9e-13 79.0 75 60.0
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.3e-13 78.2 73 56.2
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 3.3e-13 78.2 73 57.5
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 4.3e-13 77.8 73 57.5
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 4.3e-13 77.8 73 57.5
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 5.7e-13 77.4 73 57.5
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 7.4e-13 77.0 74 60.8
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.3e-12 76.3 75 54.7
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.3e-12 76.3 74 60.8
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.3e-12 76.3 74 60.8
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.3e-12 76.3 74 60.8
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.3e-12 76.3 73 57.5
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.3e-12 76.3 73 56.2
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.6e-12 75.9 73 53.4
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.6e-12 75.9 73 56.2
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 2.8e-12 75.1 73 54.8
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 3.7e-12 74.7 73 54.8
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 4.8e-12 74.3 74 59.5
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 4.8e-12 74.3 73 57.5
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 6.2e-12 73.9 73 53.4
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 6.2e-12 73.9 73 54.8
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.2e-12 73.9 73 54.8
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.2e-12 73.9 73 54.8
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 8.2e-12 73.6 81 55.6
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 8.2e-12 73.6 74 52.7
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.4e-11 72.8 73 58.9
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.8e-11 72.4 65 60.0
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.1e-11 71.6 73 53.4
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.1e-11 71.6 73 53.4
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.1e-11 71.6 73 53.4
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 4.0e-11 71.2 74 54.1
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 5.3e-11 70.9 73 57.5
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 6.9e-11 70.5 75 56.0
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.0e-11 70.1 75 53.3
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 9.0e-11 70.1 73 57.5
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 1.2e-10 69.7 73 50.7
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.2e-10 69.7 74 56.8
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-10 69.7 73 52.1
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.2e-10 69.7 73 53.4
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.5e-10 69.3 75 54.7
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.0e-10 68.9 74 55.4
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.6e-10 68.6 74 52.7
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 2.6e-10 68.6 77 53.2
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 2.6e-10 68.6 72 48.6
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 2.6e-10 68.6 73 54.8
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 3.4e-10 68.2 79 49.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 4.5e-10 67.8 82 47.6
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.8e-10 67.4 74 55.4
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 5.8e-10 67.4 73 43.8
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 7.6e-10 67.0 77 49.4
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 7.6e-10 67.0 74 50.0
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-09 66.6 77 50.6
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.0e-09 66.6 78 52.6
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-09 65.9 77 51.9
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 2.2e-09 65.5 73 45.2
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.9e-09 65.1 82 48.8
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.9e-09 65.1 85 49.4
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.8e-09 64.7 75 50.7
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 5.0e-09 64.3 77 48.1
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 5.0e-09 64.3 81 50.6
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 5.0e-09 64.3 77 48.1
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 6.5e-09 63.9 82 50.0
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 6.5e-09 63.9 73 46.6
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.4e-09 63.5 75 48.0
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 8.4e-09 63.5 77 50.6
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 8.4e-09 63.5 73 49.3
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-08 63.2 77 46.8
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.1e-08 63.2 65 50.8
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.4e-08 62.8 85 49.4
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.9e-08 62.4 77 48.1
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-08 62.4 77 46.8
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.5e-08 62.0 85 50.6
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.5e-08 62.0 73 49.3
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.5e-08 62.0 77 49.4
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.5e-08 62.0 85 47.1
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.2e-08 61.6 85 47.1
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 4.2e-08 61.2 77 45.5
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 4.2e-08 61.2 77 45.5
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 5.5e-08 60.8 77 45.5
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 5.5e-08 60.8 77 45.5
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 5.5e-08 60.8 73 46.6
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.1e-08 60.5 85 47.1
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 7.1e-08 60.5 73 52.1
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-07 59.3 77 44.2
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-07 59.3 77 44.2
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.6e-07 59.3 82 47.6
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.6e-07 59.3 71 52.1
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.6e-07 59.3 63 49.2
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.1e-07 58.9 77 46.8
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.1e-07 58.9 73 50.7
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.5e-07 58.2 79 49.4
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 4.6e-07 57.8 81 46.9
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 4.6e-07 57.8 79 46.8
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.1e-07 57.4 78 44.9
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 6.1e-07 57.4 78 47.4
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 7.9e-07 57.0 85 44.7
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 7.9e-07 57.0 77 44.2
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.0e-06 56.6 81 48.1
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.0e-06 56.6 79 46.8
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.0e-06 56.6 78 48.7
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 2.3e-06 55.5 78 46.2
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 3.9e-06 54.7 72 44.4
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.1e-06 54.3 77 46.8
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.7e-06 53.5 72 44.4


User provided reference genes

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