Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 1.7e-35 152.1 78 100.0
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 2.4e-29 131.7 78 84.6
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 6.1e-25 117.1 78 73.1
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 7.5e-23 110.2 78 70.5
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 7.5e-23 110.2 78 73.1
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 9.8e-23 109.8 77 72.7
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 2.2e-22 108.6 77 71.4
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 2.2e-22 108.6 79 74.7
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 1.4e-21 105.9 62 80.6
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 7.7e-20 100.1 65 76.9
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 5.0e-19 97.4 78 66.7
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 8.6e-19 96.7 78 66.7
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.1e-18 96.3 76 67.1
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 1.5e-18 95.9 65 75.4
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 1.5e-18 95.9 78 67.9
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 2.5e-18 95.1 78 65.4
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 3.3e-18 94.7 76 65.8
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 3.3e-18 94.7 65 73.8
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 3.3e-18 94.7 65 73.8
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 7.2e-18 93.6 64 75.0
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 7.2e-18 93.6 64 71.9
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 7.2e-18 93.6 78 66.7
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 7.2e-18 93.6 65 75.4
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 9.5e-18 93.2 65 72.3
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 9.5e-18 93.2 78 64.1
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 9.5e-18 93.2 65 72.3
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 9.5e-18 93.2 64 73.4
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 1.6e-17 92.4 65 72.3
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 2.8e-17 91.7 65 72.3
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 4.7e-17 90.9 65 73.8
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 8.0e-17 90.1 59 76.3
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 8.0e-17 90.1 67 67.2
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 1.0e-16 89.7 67 67.2
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 1.8e-16 89.0 75 61.3
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.8e-16 89.0 75 61.3
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 1.8e-16 89.0 65 67.7
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 1.8e-16 89.0 75 60.0
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 1.8e-16 89.0 58 79.3
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 2.3e-16 88.6 65 69.2
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 2.3e-16 88.6 67 65.7
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 4.0e-16 87.8 65 66.2
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 4.0e-16 87.8 78 64.1
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 4.0e-16 87.8 58 75.9
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 5.2e-16 87.4 65 69.2
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 6.8e-16 87.0 65 67.7
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 6.8e-16 87.0 75 60.0
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 6.8e-16 87.0 65 67.7
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 8.9e-16 86.7 60 78.3
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.2e-15 86.3 60 76.7
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.2e-15 86.3 78 62.8
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 1.5e-15 85.9 65 69.2
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 2.6e-15 85.1 53 75.5
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 2.6e-15 85.1 60 71.7
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 2.6e-15 85.1 60 73.3
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 3.4e-15 84.7 78 62.8
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 3.4e-15 84.7 60 70.0
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 3.4e-15 84.7 74 59.5
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 4.4e-15 84.3 58 70.7
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 5.7e-15 84.0 75 64.0
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 9.8e-15 83.2 67 62.7
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 3.7e-14 81.3 78 56.4
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 3.7e-14 81.3 65 64.6
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 4.9e-14 80.9 65 63.1
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 1.1e-13 79.7 68 58.8
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 1.4e-13 79.3 68 67.6
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 1.4e-13 79.3 68 58.8
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 2.4e-13 78.6 68 58.8
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 2.4e-13 78.6 68 58.8
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 3.2e-13 78.2 67 61.2
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 3.2e-13 78.2 64 59.4
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 4.1e-13 77.8 75 57.3
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 7.0e-13 77.0 68 58.8
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 7.0e-13 77.0 68 58.8
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 1.2e-12 76.3 61 62.3
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 2.0e-12 75.5 61 62.3
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 2.7e-12 75.1 60 63.3
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 2.7e-12 75.1 60 63.3
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 4.6e-12 74.3 55 67.3
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 7.8e-12 73.6 68 57.4
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 1.0e-11 73.2 46 73.9
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 3.9e-11 71.2 58 60.3
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 5.0e-11 70.9 58 60.3
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 1.1e-10 69.7 65 55.4
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 4.3e-10 67.8 46 67.4
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 3.6e-09 64.7 62 53.2
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 1.4e-08 62.8 49 63.3
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 4.0e-08 61.2 46 65.2
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 1.5e-07 59.3 46 60.9
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.0e-07 58.9 56 50.0
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 2.6e-07 58.5 57 47.4
Atru.chr2.2826 Acer truncatum HOM05D007448 ORTHO05D009392 5.8e-07 57.4 60 58.3
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 7.5e-07 57.0 55 52.7
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 7.5e-07 57.0 55 52.7
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 7.5e-07 57.0 62 51.6
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 2.2e-06 55.5 59 52.5
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 2.2e-06 55.5 52 53.8
Pp3c7_12690 Physcomitrium patens HOM05D007448 ORTHO05D009392 3.7e-06 54.7 60 48.3
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 3.7e-06 54.7 46 56.5
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 4.9e-06 54.3 46 58.7
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 4.9e-06 54.3 46 56.5


User provided reference genes

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