Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 5.2e-56 220.7 104 100.0
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 7.6e-23 110.5 115 57.4
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 4.2e-21 104.8 115 56.5
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 9.3e-21 103.6 115 54.8
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 5.7e-18 94.4 111 52.3
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 1.6e-17 92.8 111 51.4
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 2.2e-17 92.4 115 50.4
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 8.2e-17 90.5 107 51.4
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 1.8e-16 89.4 105 50.5
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 9.0e-16 87.0 106 51.9
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 1.7e-14 82.8 113 48.7
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 5.0e-14 81.3 112 43.8
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 8.5e-14 80.5 71 59.2
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 1.9e-13 79.3 111 42.3
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 2.5e-13 79.0 114 45.6
Lalb_Chr19g0134351 Lupinus albus HOM05D007708 ORTHO05D009506 4.2e-13 78.2 104 44.2
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 2.7e-12 75.5 73 56.2
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 3.6e-12 75.1 74 58.1
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.6e-12 75.1 112 40.2
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 6.1e-12 74.3 114 41.2
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 7.9e-12 73.9 71 54.9
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 7.9e-12 73.9 71 54.9
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 1.0e-11 73.6 113 42.5
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 1.8e-11 72.8 111 41.4
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 2.3e-11 72.4 105 43.8
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 3.0e-11 72.0 116 44.0
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 3.0e-11 72.0 77 50.6
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 3.9e-11 71.6 91 48.4
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 6.7e-11 70.9 77 51.9
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 6.7e-11 70.9 77 54.5
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 6.7e-11 70.9 71 54.9
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 1.1e-10 70.1 77 53.2
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 1.1e-10 70.1 77 51.9
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 1.1e-10 70.1 115 40.0
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 1.5e-10 69.7 70 55.7
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 1.5e-10 69.7 70 55.7
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 1.5e-10 69.7 70 55.7
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 1.5e-10 69.7 70 58.6
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.5e-10 69.7 78 48.7
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.5e-10 69.7 78 50.0
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.5e-10 69.7 78 50.0
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 2.0e-10 69.3 77 51.9
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 2.0e-10 69.3 116 39.7
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 2.5e-10 68.9 77 51.9
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 2.5e-10 68.9 77 51.9
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 2.5e-10 68.9 84 46.4
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 3.3e-10 68.6 77 51.9
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 3.3e-10 68.6 77 51.9
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 3.3e-10 68.6 77 51.9
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 3.3e-10 68.6 77 51.9
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 3.3e-10 68.6 77 51.9
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 4.3e-10 68.2 74 52.7
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 4.3e-10 68.2 111 38.7
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 9.7e-10 67.0 84 46.4
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 9.7e-10 67.0 84 46.4
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 9.7e-10 67.0 84 46.4
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 9.7e-10 67.0 84 46.4
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 2.2e-09 65.9 84 45.2
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 1.1e-08 63.5 84 47.6
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 1.1e-08 63.5 77 48.1
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 2.4e-08 62.4 77 46.8
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 2.4e-08 62.4 77 46.8
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 2.4e-08 62.4 77 46.8
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 6.9e-08 60.8 77 45.5
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 6.9e-08 60.8 77 45.5
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 6.9e-08 60.8 80 43.8
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 9.1e-08 60.5 80 43.8
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 2.6e-07 58.9 39 71.8
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 4.5e-07 58.2 99 43.4
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 7.7e-07 57.4 43 65.1
Lsat_1_v5_gn_7_105741 Lactuca sativa HOM05D007708 ORTHO05D009506 1.0e-06 57.0 106 37.7
PGR031G0494 Punica granatum HOM05D007708 ORTHO05D009506 1.0e-06 57.0 46 63.0
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 1.0e-06 57.0 40 70.0
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 2.2e-06 55.8 39 69.2
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 2.2e-06 55.8 87 41.4
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 2.9e-06 55.5 39 69.2
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 2.9e-06 55.5 80 43.8
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 3.8e-06 55.1 40 67.5
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 5.0e-06 54.7 38 68.4
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 6.5e-06 54.3 70 45.7
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 8.5e-06 53.9 101 38.6


User provided reference genes

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