Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 3.1e-165 585.1 306 100.0
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 4.5e-156 554.7 307 95.8
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 6.1e-153 544.3 306 92.2
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 4.8e-150 534.6 285 92.6
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 2.9e-147 525.4 306 88.9
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 3.8e-147 525.0 306 86.9
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 4.2e-146 521.5 306 87.3
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.6e-145 519.6 306 89.9
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.4e-144 516.5 306 89.2
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.8e-144 516.2 310 86.8
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 3.0e-144 515.4 307 87.9
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 8.8e-144 513.8 280 90.4
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 5.7e-143 511.1 279 91.4
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.7e-142 509.6 279 91.4
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 2.8e-142 508.8 306 83.7
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 6.3e-142 507.7 285 88.8
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.4e-141 506.5 308 84.4
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 9.1e-141 503.8 281 89.3
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.2e-140 503.4 281 90.4
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 1.2e-140 503.4 286 88.1
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.6e-140 503.1 283 87.3
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.6e-140 503.1 283 87.3
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.6e-140 503.1 283 87.3
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 1.6e-140 503.1 282 88.3
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.6e-140 503.1 286 86.4
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 2.0e-140 502.7 282 88.3
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 2.0e-140 502.7 306 82.0
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 2.7e-140 502.3 282 88.3
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.5e-140 501.9 282 88.3
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 4.5e-140 501.5 283 86.9
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 4.5e-140 501.5 285 86.3
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 4.5e-140 501.5 285 87.0
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 4.5e-140 501.5 306 81.7
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.0e-139 500.4 285 86.3
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.3e-139 500.0 307 81.8
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.2e-139 499.2 308 84.1
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 2.9e-139 498.8 304 82.6
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 3.8e-139 498.4 305 84.3
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 6.5e-139 497.7 308 82.8
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 8.5e-139 497.3 283 85.9
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 8.5e-139 497.3 280 86.8
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.1e-138 496.9 281 87.2
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.9e-138 496.1 306 81.7
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.5e-138 495.7 280 86.4
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 3.2e-138 495.4 285 85.3
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.2e-138 495.0 280 86.8
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 5.5e-138 494.6 306 82.0
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 7.2e-138 494.2 285 84.9
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 7.2e-138 494.2 280 86.1
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 7.2e-138 494.2 306 81.4
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 7.2e-138 494.2 306 83.0
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.2e-137 493.4 282 86.2
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.6e-137 493.0 300 82.7
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.6e-137 493.0 280 86.4
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.6e-137 493.0 306 81.7
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.6e-137 493.0 284 85.2
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.1e-137 492.7 283 85.2
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.1e-137 492.7 283 85.2
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 2.1e-137 492.7 283 85.5
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 2.7e-137 492.3 306 80.4
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 3.6e-137 491.9 280 87.1
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 3.6e-137 491.9 306 80.4
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 3.6e-137 491.9 285 84.9
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.1e-137 491.1 306 80.1
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.1e-137 491.1 279 86.0
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 8.0e-137 490.7 284 85.6
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.0e-136 490.3 289 85.1
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.4e-136 490.0 309 81.2
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.4e-136 490.0 280 86.1
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 1.4e-136 490.0 282 85.5
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.8e-136 489.6 309 83.5
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.8e-136 489.6 287 84.7
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 8.8e-136 487.3 310 83.5
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 8.8e-136 487.3 275 88.7
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 8.8e-136 487.3 282 85.8
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 4.4e-135 485.0 277 85.6
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 5.7e-135 484.6 278 84.9
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 2.8e-134 482.3 287 82.2
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 4.8e-134 481.5 286 83.6
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 8.3e-134 480.7 282 85.1
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.8e-133 479.6 285 83.9
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 1.8e-133 479.6 286 83.2
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 2.4e-133 479.2 281 84.3
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 2.4e-133 479.2 280 84.3
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 2.4e-133 479.2 308 79.5
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 2.0e-132 476.1 318 78.0
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.0e-131 473.8 308 77.3
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.0e-131 473.8 280 83.9
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.3e-131 473.4 282 83.3
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 5.0e-131 471.5 306 78.8
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 1.5e-130 469.9 281 84.7
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 2.5e-130 469.2 282 83.0
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 9.5e-130 467.2 282 83.7
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.6e-129 465.3 282 83.0
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 4.7e-129 464.9 308 76.9
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 6.1e-129 464.5 282 81.6
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 1.0e-128 463.8 319 76.2
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.0e-128 463.8 280 81.1
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.8e-128 463.0 308 77.6
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.3e-128 462.6 286 82.2
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 3.0e-128 462.2 304 77.3
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 8.9e-128 460.7 265 86.4
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 8.9e-128 460.7 282 84.0
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 8.9e-128 460.7 290 78.6
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.0e-127 459.5 291 79.7
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 7.5e-127 457.6 307 75.2
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.3e-126 456.8 281 81.5
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 2.2e-126 456.1 287 80.8
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 3.7e-126 455.3 286 80.4
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 8.3e-126 454.1 278 81.3
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 5.4e-125 451.4 287 80.8
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 1.6e-124 449.9 283 79.9
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 8.6e-123 444.1 302 75.5
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 3.3e-122 442.2 363 67.5
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 3.3e-122 442.2 310 74.5
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 2.8e-121 439.1 276 79.3
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 4.7e-121 438.3 254 84.3
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.1e-121 438.0 259 83.8
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.8e-120 436.4 282 78.4
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 4.0e-120 435.3 280 78.2
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 2.2e-118 429.5 281 76.2
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-117 427.2 276 77.9
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 3.9e-115 418.7 269 79.6
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.9e-114 416.4 218 93.6
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.9e-114 416.4 218 93.6
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.5e-111 406.8 256 80.1
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 5.8e-111 404.8 280 75.0
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 7.5e-111 404.4 221 90.0
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 4.9e-110 401.7 287 68.3
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 1.4e-109 400.2 221 88.7
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.3e-107 393.7 250 76.0
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 8.6e-107 391.0 251 75.3
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 8.1e-105 384.4 272 69.5
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.5e-103 380.2 221 83.7
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 4.4e-103 378.6 253 71.1
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 1.0e-99 367.5 200 90.5
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.1e-97 359.8 294 66.3
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.2e-94 349.7 215 82.3
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 4.3e-90 335.5 182 91.8
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 5.6e-90 335.1 182 90.1
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 4.7e-89 332.0 208 80.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 5.6e-82 308.5 174 87.9
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 6.9e-80 301.6 187 80.2
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 7.1e-77 291.6 221 73.8
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 4.3e-74 282.3 152 90.8
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.9e-67 259.2 194 68.0
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 9.3e-61 238.0 146 80.8
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 6.7e-59 231.9 209 62.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 8.2e-49 198.4 245 47.8
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 4.5e-47 192.6 119 75.6
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 3.6e-44 183.0 158 62.7
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.4e-43 181.0 136 70.6
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 3.3e-42 176.4 181 56.9
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 2.4e-40 170.2 105 76.2
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 7.2e-37 158.7 86 87.2
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-34 151.4 96 74.0
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.9e-30 136.7 196 45.9
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 5.0e-30 136.0 301 35.2
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 8.5e-30 135.2 84 79.8
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.4e-29 131.7 88 72.7
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 9.8e-26 121.7 66 90.9
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 9.8e-26 121.7 66 90.9
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 2.2e-25 120.6 170 43.5
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.5e-23 113.2 88 83.0
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.5e-23 113.2 88 83.0
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 4.1e-16 89.7 53 79.2
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 5.4e-16 89.4 158 39.9
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 3.8e-14 83.2 85 54.1
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.1e-13 81.6 79 55.7
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.9e-13 80.9 96 52.1
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.6e-12 77.8 66 62.1
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 4.7e-12 76.3 60 66.7
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 1.4e-11 74.7 107 45.8
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 2.3e-11 73.9 59 64.4
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 4.4e-10 69.7 110 40.9
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 9.2e-08 62.0 43 72.1
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.2e-07 61.6 34 82.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 1.6e-07 61.2 42 73.8
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 2.7e-07 60.5 57 52.6
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 3.5e-07 60.1 38 76.3


User provided reference genes

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