Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G240900 Glycine max HOM05D000294 ORTHO05D000177 8.1e-67 256.9 128 100.0
Glyma.08G048000 Glycine max HOM05D000294 ORTHO05D000177 5.0e-32 141.4 70 90.0
Glyma.05G241000 Glycine max HOM05D000294 ORTHO05D000177 9.4e-31 137.1 70 88.6
Phvul.002G324100 Phaseolus vulgaris HOM05D000294 ORTHO05D000177 4.7e-30 134.8 96 69.8
VMungo0251G0686 Vigna mungo HOM05D000294 ORTHO05D000177 3.9e-29 131.7 123 57.7
Lalb_Chr05g0222061 Lupinus albus HOM05D000294 ORTHO05D000177 5.3e-26 121.3 70 75.7
Lalb_Chr09g0330761 Lupinus albus HOM05D000294 ORTHO05D000177 5.3e-26 121.3 70 77.1
Ca_03341_v3 Cicer arietinum L. HOM05D000294 ORTHO05D000177 2.2e-24 115.9 124 52.4
Medtr8g105930 Medicago truncatula HOM05D000294 ORTHO05D000177 3.8e-24 115.2 76 67.1
Lj4g0010632 Lotus japonicus HOM05D000294 ORTHO05D000177 1.1e-23 113.6 70 72.9
TPR.G19259 Trifolium pratense HOM05D000294 ORTHO05D000177 5.5e-23 111.3 70 68.6
Psat7g003280 Pisum sativum HOM05D000294 ORTHO05D000177 9.4e-23 110.5 70 68.6
arahy.Tifrunner.gnm1.ann1.C1JFDB Arachis hypogaea HOM05D000294 ORTHO05D000177 1.6e-22 109.8 65 75.4
arahy.Tifrunner.gnm1.ann1.N49JF0 Arachis hypogaea HOM05D000294 ORTHO05D000177 1.6e-22 109.8 65 75.4
Glyma.07G172800 Glycine max HOM05D000294 ORTHO05D000177 2.6e-20 102.4 71 64.8
Lj2g0009454 Lotus japonicus HOM05D000294 ORTHO05D000177 4.8e-19 98.2 70 60.0
Prupe.1G335800 Prunus persica HOM05D000294 ORTHO05D000177 1.0e-16 90.5 81 53.1
RcHm_v2.0_Chr4g0442401 Rosa chinensis HOM05D000294 ORTHO05D000177 8.5e-16 87.4 80 52.5
MD16G1015800 Malus domestica HOM05D000294 ORTHO05D000177 1.1e-15 87.0 81 51.9
FAN22G1641 Fragaria x ananassa HOM05D000742 ORTHO05D000924 1.5e-15 86.7 80 52.5
MD13G1017800 Malus domestica HOM05D000294 ORTHO05D000177 9.4e-15 84.0 81 49.4
Haze_10844 Corylus avellana HOM05D000294 ORTHO05D000177 1.2e-14 83.6 71 53.5
FvH4_4g33250 Fragaria vesca HOM05D000294 ORTHO05D000177 1.2e-14 83.6 80 51.2
FAN07G0499 Fragaria x ananassa HOM05D000742 ORTHO05D000924 1.2e-14 83.6 80 51.2
FAN12G2312 Fragaria x ananassa HOM05D000742 ORTHO05D000924 1.2e-14 83.6 80 51.2
FAN17G2951 Fragaria x ananassa HOM05D000742 ORTHO05D000924 1.2e-14 83.6 80 51.2
Cfa015050 Carpinus fangiana HOM05D000294 ORTHO05D000177 1.6e-14 83.2 77 53.2
CiPaw.06G055100 Carya illinoinensis HOM05D000294 ORTHO05D000177 2.1e-14 82.8 80 51.2
Duzib248G1639 Durio zibethinus HOM05D000294 ORTHO05D000177 6.1e-14 81.3 77 55.8
Eucgr.G02080 Eucalyptus grandis HOM05D000294 ORTHO05D000177 6.1e-14 81.3 77 51.9
PGR142G0411 Punica granatum HOM05D000294 ORTHO05D000177 6.1e-14 81.3 77 53.2
Manes.15G136800 Manihot esculenta HOM05D000294 ORTHO05D000177 1.0e-13 80.5 93 50.5
Atru.chr11.809 Acer truncatum HOM05D000294 ORTHO05D000177 1.4e-13 80.1 77 51.9
Cpa.g.sc2.160 Carica papaya HOM05D000294 ORTHO05D000177 1.4e-13 80.1 77 51.9
Potri.010G103500 Populus trichocarpa HOM05D000294 ORTHO05D000177 1.4e-13 80.1 80 50.0
THA.LOC104824121 Tarenaya hassleriana HOM05D000294 ORTHO05D000177 1.4e-13 80.1 80 48.8
Thecc.02G307100 Theobroma cacao HOM05D000294 ORTHO05D000177 2.3e-13 79.3 80 52.5
Gohir.A03G112100 Gossypium hirsutum HOM05D000294 ORTHO05D000177 3.0e-13 79.0 80 52.5
Gohir.D02G136700 Gossypium hirsutum HOM05D000294 ORTHO05D000177 3.0e-13 79.0 80 52.5
Gorai.005G152700 Gossypium raimondii HOM05D000294 ORTHO05D000177 3.0e-13 79.0 80 52.5
BcaC06g34116 Brassica carinata HOM05D000294 ORTHO05D000177 4.0e-13 78.6 99 46.5
C07p32530 Brassica napus HOM05D000294 ORTHO05D000177 4.0e-13 78.6 99 46.5
BolC7t43780H Brassica oleracea HOM05D000294 ORTHO05D000177 4.0e-13 78.6 99 46.5
Potri.008G137300 Populus trichocarpa HOM05D000294 ORTHO05D000177 4.0e-13 78.6 80 48.8
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 5.2e-13 78.2 77 53.2
Sabra10G0076100 Salix brachista HOM05D000294 ORTHO05D000177 5.2e-13 78.2 80 48.8
Cc11_g06420 Coffea canephora HOM05D000294 ORTHO05D000177 6.8e-13 77.8 83 48.2
Thhalv10005480m.g Eutrema salsugineum HOM05D000294 ORTHO05D000177 6.8e-13 77.8 99 46.5
Sabra08G0104700 Salix brachista HOM05D000294 ORTHO05D000177 6.8e-13 77.8 80 47.5
CSS0029262 Camellia sinensis var. sinensis HOM05D000294 ORTHO05D000177 1.2e-12 77.0 82 50.0
AT2G01818 Arabidopsis thaliana HOM05D000294 ORTHO05D000177 1.5e-12 76.6 104 44.2
Duzib268G0713 Durio zibethinus HOM05D000294 ORTHO05D000177 1.5e-12 76.6 81 49.4
A06p44110 Brassica napus HOM05D000294 ORTHO05D000177 2.0e-12 76.3 99 45.5
BraA06t27285Z Brassica rapa HOM05D000294 ORTHO05D000177 2.0e-12 76.3 99 45.5
Manes.17G085975 Manihot esculenta HOM05D000294 ORTHO05D000177 2.0e-12 76.3 80 47.5
BcaC03g17076 Brassica carinata HOM05D000294 ORTHO05D000177 2.6e-12 75.9 99 45.5
BcaC06g31276 Brassica carinata HOM05D000294 ORTHO05D000177 2.6e-12 75.9 99 45.5
A02p32360 Brassica napus HOM05D000294 ORTHO05D000177 2.6e-12 75.9 99 45.5
BolC2t11074H Brassica oleracea HOM05D000294 ORTHO05D000177 2.6e-12 75.9 99 45.5
BraA02t08253Z Brassica rapa HOM05D000294 ORTHO05D000177 2.6e-12 75.9 99 45.5
Carub.0005s0078 Capsella rubella HOM05D000294 ORTHO05D000177 3.4e-12 75.5 104 44.2
Ciclev10016611m.g Citrus clementina HOM05D000294 ORTHO05D000177 3.4e-12 75.5 80 47.5
CANSAT78G0212 Cannabis sativa HOM05D000294 ORTHO05D000177 4.4e-12 75.1 77 46.8
CARHR144370 Cardamine hirsuta HOM05D000294 ORTHO05D000177 4.4e-12 75.1 102 44.1
TPR.G13717 Trifolium pratense HOM05D000294 ORTHO05D000177 4.4e-12 75.1 130 34.6
AL5G10930 Arabidopsis lyrata HOM05D000294 ORTHO05D000177 5.7e-12 74.7 104 43.3
Gohir.A13G027800 Gossypium hirsutum HOM05D000294 ORTHO05D000177 7.5e-12 74.3 77 50.6
Rhsim09G0087400 Rhododendron simsii HOM05D000294 ORTHO05D000177 7.5e-12 74.3 94 45.7
Sed0020258 Sechium edule HOM05D000294 ORTHO05D000177 7.5e-12 74.3 80 46.2
Lj3A862T37 Lonicera japonica HOM05D000294 ORTHO05D000177 1.3e-11 73.6 71 50.7
Gorai.013G029900 Gossypium raimondii HOM05D000294 ORTHO05D000177 1.7e-11 73.2 77 50.6
ClCG01G006660 Citrullus lanatus HOM05D000294 ORTHO05D000177 2.8e-11 72.4 80 45.0
Sed0028135 Sechium edule HOM05D000294 ORTHO05D000177 2.8e-11 72.4 80 45.0
MELO3C005262.2 Cucumis melo HOM05D000294 ORTHO05D000177 3.7e-11 72.0 80 45.0
CsaV3_5G027910 Cucumis sativus L. HOM05D000294 ORTHO05D000177 3.7e-11 72.0 80 45.0
QL03p038266 Quercus lobata HOM05D000294 ORTHO05D000177 4.8e-11 71.6 79 46.8
C02p49950 Brassica napus HOM05D000294 ORTHO05D000177 6.3e-11 71.2 90 46.7
Gohir.A12G154500 Gossypium hirsutum HOM05D000294 ORTHO05D000177 6.3e-11 71.2 80 48.8
Dinv32674 Davidia involucrata HOM05D000294 ORTHO05D000177 8.3e-11 70.9 82 47.6
BcaB07g30372 Brassica carinata HOM05D000294 ORTHO05D000177 1.4e-10 70.1 98 41.8
Gohir.D13G026600 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.4e-10 70.1 74 50.0
GSVIVG01011622001 Vitis vinifera HOM05D000294 ORTHO05D000177 2.4e-10 69.3 82 45.1
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 3.1e-10 68.9 70 47.1
THA.LOC104823611 Tarenaya hassleriana HOM05D000294 ORTHO05D000177 5.4e-10 68.2 90 43.3
CAN.G74.24 Capsicum annuum HOM05D000294 ORTHO05D000177 7.0e-10 67.8 101 40.6
Lsat_1_v5_gn_4_23140 Lactuca sativa HOM05D000294 ORTHO05D000177 9.1e-10 67.4 85 44.7
Gohir.A05G012400 Gossypium hirsutum HOM05D000294 ORTHO05D000177 4.5e-09 65.1 63 41.3
Gohir.D05G013500 Gossypium hirsutum HOM05D000294 ORTHO05D000177 4.5e-09 65.1 63 41.3
Gorai.009G013500 Gossypium raimondii HOM05D000294 ORTHO05D000177 4.5e-09 65.1 63 41.3
Solyc04g008090.4 Solanum lycopersicum HOM05D000294 ORTHO05D000177 4.5e-09 65.1 98 39.8
Sopen04g003230 Solanum pennellii HOM05D000294 ORTHO05D000177 4.5e-09 65.1 98 39.8
PGSC0003DMG400029466 Solanum tuberosum HOM05D000294 ORTHO05D000177 4.5e-09 65.1 98 39.8
TAR636G3667 Trochodendron aralioides HOM05D000294 ORTHO05D000177 4.5e-09 65.1 71 43.7
TAR629G2187 Trochodendron aralioides HOM05D000294 ORTHO05D000177 7.7e-09 64.3 71 45.1
MSTRG.13637 Avicennia marina HOM05D000294 ORTHO05D000177 1.3e-08 63.5 99 42.4
Nn3g18431 Nelumbo nucifera HOM05D000294 ORTHO05D000177 1.3e-08 63.5 71 45.1
COL.COLO4_24137 Corchorus olitorius HOM05D000294 ORTHO05D000177 1.7e-08 63.2 63 39.7
HanXRQChr03g0088091 Helianthus annuus HOM05D000294 ORTHO05D000177 1.7e-08 63.2 63 41.3
HanXRQChr16g0527281 Helianthus annuus HOM05D000294 ORTHO05D000177 1.7e-08 63.2 84 41.7
Duzib150G0050 Durio zibethinus HOM05D000294 ORTHO05D000177 2.2e-08 62.8 63 39.7
Nn4g24470 Nelumbo nucifera HOM05D000294 ORTHO05D000177 2.2e-08 62.8 71 43.7
Thecc.09G139200 Theobroma cacao HOM05D000294 ORTHO05D000177 2.2e-08 62.8 63 39.7
ClCG01G025620 Citrullus lanatus HOM05D000294 ORTHO05D000177 2.9e-08 62.4 69 43.5
MELO3C007023.2 Cucumis melo HOM05D000294 ORTHO05D000177 2.9e-08 62.4 69 43.5
CsaV3_6G052850 Cucumis sativus L. HOM05D000294 ORTHO05D000177 2.9e-08 62.4 69 43.5
Nitab4.5_0003884g0050 Nicotiana tabacum HOM05D000294 ORTHO05D000177 2.9e-08 62.4 101 38.6
SalBow2G1717 Salvia bowleyana HOM05D000294 ORTHO05D000177 2.9e-08 62.4 100 41.0
Lj6g0009382 Lotus japonicus HOM05D000294 ORTHO05D000177 6.5e-08 61.2 61 44.3
Gohir.A06G051400 Gossypium hirsutum HOM05D000294 ORTHO05D000177 8.5e-08 60.8 63 39.7
Gohir.D06G050500 Gossypium hirsutum HOM05D000294 ORTHO05D000177 8.5e-08 60.8 63 39.7
Gorai.010G057300 Gossypium raimondii HOM05D000294 ORTHO05D000177 8.5e-08 60.8 63 39.7
MD07G1117000 Malus domestica HOM05D000294 ORTHO05D000177 8.5e-08 60.8 73 37.0
Manes.01G268300 Manihot esculenta HOM05D000294 ORTHO05D000177 8.5e-08 60.8 66 37.9
ECA234G1516 Erigeron canadensis HOM05D000294 ORTHO05D000177 1.1e-07 60.5 99 39.4
QL11p013119 Quercus lobata HOM05D000294 ORTHO05D000177 1.1e-07 60.5 102 34.3
Sed0000563 Sechium edule HOM05D000294 ORTHO05D000177 1.1e-07 60.5 68 41.2
Potri.014G059300 Populus trichocarpa HOM05D000294 ORTHO05D000177 1.5e-07 60.1 66 39.4
TAR622G0393 Trochodendron aralioides HOM05D000294 ORTHO05D000177 1.5e-07 60.1 78 37.2
Manes.05G048200 Manihot esculenta HOM05D000294 ORTHO05D000177 1.9e-07 59.7 66 37.9
MSTRG.2116 Avicennia marina HOM05D000294 ORTHO05D000177 2.5e-07 59.3 83 41.0
Sabra14G0043400 Salix brachista HOM05D000294 ORTHO05D000177 2.5e-07 59.3 66 39.4
Sed0021955 Sechium edule HOM05D000294 ORTHO05D000177 2.5e-07 59.3 63 36.5
TWI14G1394 Tripterygium wilfordii HOM05D000294 ORTHO05D000177 2.5e-07 59.3 66 39.4
TWI59G0372 Tripterygium wilfordii HOM05D000294 ORTHO05D000177 2.5e-07 59.3 66 37.9
Oeu043973.1 Olea europaea HOM05D000294 ORTHO05D000177 3.2e-07 58.9 83 43.4
PSO478G1865 Papaver somniferum HOM05D000294 ORTHO05D000177 3.2e-07 58.9 80 37.5
Thecc.01G380700 Theobroma cacao HOM05D000294 ORTHO05D000177 3.2e-07 58.9 73 35.6
GSVIVG01031929001 Vitis vinifera HOM05D000294 ORTHO05D000177 3.2e-07 58.9 66 37.9
CANSAT35G1247 Cannabis sativa HOM05D000294 ORTHO05D000177 4.2e-07 58.5 88 37.5
Hma1.2p1_0640F.1_g194140 Hydrangea macrophylla HOM05D000294 ORTHO05D000177 4.2e-07 58.5 102 34.3
PSO017G0580 Papaver somniferum HOM05D000294 ORTHO05D000177 4.2e-07 58.5 80 37.5
Gohir.A11G079300 Gossypium hirsutum HOM05D000294 ORTHO05D000177 5.5e-07 58.2 73 34.2
DCAR_017768 Daucus carota HOM05D000294 ORTHO05D000177 7.2e-07 57.8 66 37.9
Duzib138G0354 Durio zibethinus HOM05D000294 ORTHO05D000177 7.2e-07 57.8 73 34.2
TAR625G0684 Trochodendron aralioides HOM05D000294 ORTHO05D000177 7.2e-07 57.8 66 36.4
ClCG06G003130 Citrullus lanatus HOM05D000294 ORTHO05D000177 9.4e-07 57.4 66 37.9
ClCG07G005460 Citrullus lanatus HOM05D000294 ORTHO05D000177 9.4e-07 57.4 62 40.3
MELO3C021151.2 Cucumis melo HOM05D000294 ORTHO05D000177 9.4e-07 57.4 66 37.9
CsaV3_6G009240 Cucumis sativus L. HOM05D000294 ORTHO05D000177 9.4e-07 57.4 66 37.9
Gohir.A12G218900 Gossypium hirsutum HOM05D000294 ORTHO05D000177 9.4e-07 57.4 66 37.9
Duzib205G0800 Durio zibethinus HOM05D000294 ORTHO05D000177 1.2e-06 57.0 66 36.4
Gohir.A03G009600 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.2e-06 57.0 66 36.4
Gohir.A07G146800 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.2e-06 57.0 73 34.2
Gohir.D03G161200 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.2e-06 57.0 66 36.4
Gohir.D07G152800 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.2e-06 57.0 73 34.2
Gorai.001G174900 Gossypium raimondii HOM05D000294 ORTHO05D000177 1.2e-06 57.0 73 34.2
Gorai.003G169800 Gossypium raimondii HOM05D000294 ORTHO05D000177 1.2e-06 57.0 66 36.4
HanXRQChr17g0566041 Helianthus annuus HOM05D000294 ORTHO05D000177 1.2e-06 57.0 86 38.4
PSO541G6002 Papaver somniferum HOM05D000294 ORTHO05D000177 1.2e-06 57.0 66 37.9
Sed0009864 Sechium edule HOM05D000294 ORTHO05D000177 1.2e-06 57.0 69 43.5
Aqoxy7G00727 Aquilegia oxysepala HOM05D000294 ORTHO05D000177 1.6e-06 56.6 73 32.9
DCAR_014920 Daucus carota HOM05D000294 ORTHO05D000177 1.6e-06 56.6 66 36.4
Nn1g05067 Nelumbo nucifera HOM05D000294 ORTHO05D000177 1.6e-06 56.6 66 34.8
PSO675G3042 Papaver somniferum HOM05D000294 ORTHO05D000177 1.6e-06 56.6 66 36.4
Gohir.D12G221200 Gossypium hirsutum HOM05D000294 ORTHO05D000177 2.1e-06 56.2 66 36.4
Sed0000531 Sechium edule HOM05D000294 ORTHO05D000177 2.1e-06 56.2 69 40.6
SGA_v2.0_scaffold143G35730 Striga asiatica HOM05D000294 ORTHO05D000177 2.1e-06 56.2 98 38.8
Thecc.03G256400 Theobroma cacao HOM05D000294 ORTHO05D000177 2.1e-06 56.2 66 36.4
ATR0763G081 Amborella trichopoda HOM05D000294 ORTHO05D000177 2.7e-06 55.8 68 35.3
Prupe.2G140000 Prunus persica HOM05D000294 ORTHO05D000177 2.7e-06 55.8 73 31.5
QL12p013367 Quercus lobata HOM05D000294 ORTHO05D000177 2.7e-06 55.8 66 36.4
Medtr2g055210 Medicago truncatula HOM05D000294 ORTHO05D000177 3.6e-06 55.5 66 33.3
Potri.002G144900 Populus trichocarpa HOM05D000294 ORTHO05D000177 3.6e-06 55.5 66 37.9
Atru.chr5.266 Acer truncatum HOM05D000294 ORTHO05D000177 4.7e-06 55.1 73 34.2
Duzib133G0402 Durio zibethinus HOM05D000294 ORTHO05D000177 4.7e-06 55.1 73 32.9
MBI02_g23958_MAGBIO Magnolia biondii HOM05D003131 ORTHO05D003761 4.7e-06 55.1 69 37.7
Sabra02G0112800 Salix brachista HOM05D000294 ORTHO05D000177 4.7e-06 55.1 66 37.9
Sed0013657 Sechium edule HOM05D000294 ORTHO05D000177 4.7e-06 55.1 66 36.4
Cpa.g.sc145.1 Carica papaya HOM05D000294 ORTHO05D000177 6.1e-06 54.7 66 34.8
COL.COLO4_12509 Corchorus olitorius HOM05D000294 ORTHO05D000177 6.1e-06 54.7 66 34.8
Medtr1g032880 Medicago truncatula HOM05D000294 ORTHO05D000177 6.1e-06 54.7 99 35.4
Nn5g29543 Nelumbo nucifera HOM05D000294 ORTHO05D000177 6.1e-06 54.7 61 41.0
Sopen07g024560 Solanum pennellii HOM05D000294 ORTHO05D000177 6.1e-06 54.7 91 36.3
Migut.E00501 Erythranthe guttata HOM05D000294 ORTHO05D000177 8.0e-06 54.3 102 35.3
Glyma.11G169264 Glycine max HOM05D000294 ORTHO05D000177 8.0e-06 54.3 66 33.3
Solyc07g049120.2 Solanum lycopersicum HOM05D000294 ORTHO05D000177 8.0e-06 54.3 91 35.2


User provided reference genes

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