Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 6.8e-127 457.6 276 100.0
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 2.3e-74 283.1 263 66.2
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 2.4e-60 236.5 254 57.5
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 3.5e-59 232.6 222 63.1
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 4.6e-59 232.3 278 53.6
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 7.9e-59 231.5 249 58.2
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 1.8e-58 230.3 259 54.8
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 1.1e-57 227.6 271 54.6
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.1e-57 227.6 260 55.4
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 1.5e-57 227.3 257 58.0
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 2.5e-57 226.5 259 56.8
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 3.3e-57 226.1 224 62.1
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 5.6e-57 225.3 267 55.4
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 2.8e-56 223.0 271 52.4
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 1.4e-55 220.7 265 55.1
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 3.1e-55 219.5 273 52.7
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 6.9e-55 218.4 232 57.8
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 9.0e-55 218.0 261 53.6
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 1.2e-54 217.6 253 55.3
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.5e-54 217.2 266 53.8
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 1.5e-54 217.2 259 55.6
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 1.5e-54 217.2 269 52.4
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.0e-54 216.9 261 54.4
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 2.0e-54 216.9 260 53.1
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 2.6e-54 216.5 270 55.6
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.4e-54 216.1 258 52.7
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 5.8e-54 215.3 214 60.3
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 5.8e-54 215.3 271 51.7
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 7.6e-54 214.9 247 54.7
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.3e-53 214.2 229 55.5
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 2.2e-53 213.4 258 54.7
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 2.9e-53 213.0 273 52.0
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 4.9e-53 212.2 197 63.5
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.1e-52 211.1 247 55.5
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.4e-52 210.7 247 55.5
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.4e-52 210.7 195 63.6
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 1.9e-52 210.3 216 57.4
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.9e-52 210.3 244 52.0
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 2.5e-52 209.9 267 52.8
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 4.2e-52 209.1 178 65.2
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 5.5e-52 208.8 166 66.9
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 1.2e-51 207.6 230 53.9
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 1.2e-51 207.6 176 64.8
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 2.1e-51 206.8 286 49.3
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 3.5e-51 206.1 197 59.4
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 4.6e-51 205.7 269 52.0
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 4.6e-51 205.7 252 52.4
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 6.0e-51 205.3 248 54.8
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 6.0e-51 205.3 168 67.3
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 7.9e-51 204.9 177 66.7
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.8e-50 203.8 268 51.5
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 2.3e-50 203.4 245 53.9
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 3.0e-50 203.0 200 59.0
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 3.9e-50 202.6 245 52.7
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 3.9e-50 202.6 171 65.5
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 3.9e-50 202.6 171 65.5
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 8.7e-50 201.4 269 51.3
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 1.1e-49 201.1 166 69.3
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.5e-49 200.7 269 52.0
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.3e-49 199.1 269 51.3
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 5.7e-49 198.7 223 56.1
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 5.7e-49 198.7 258 48.8
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 5.7e-49 198.7 181 61.9
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 7.4e-49 198.4 271 50.2
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 9.7e-49 198.0 195 59.0
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 1.6e-48 197.2 175 61.7
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 2.2e-48 196.8 252 50.4
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 2.2e-48 196.8 272 48.5
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 6.3e-48 195.3 189 58.7
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 6.3e-48 195.3 253 49.8
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.1e-47 194.5 174 62.6
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 1.4e-47 194.1 170 64.1
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 3.1e-47 193.0 169 63.9
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 6.9e-47 191.8 204 57.4
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.2e-46 191.0 260 49.2
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 1.5e-46 190.7 261 52.1
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 2.6e-46 189.9 209 52.6
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 3.4e-46 189.5 185 59.5
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 4.5e-46 189.1 231 51.1
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 5.9e-46 188.7 184 59.2
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 7.7e-46 188.3 187 56.1
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 7.7e-46 188.3 173 60.7
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 7.7e-46 188.3 261 48.7
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 7.7e-46 188.3 260 48.8
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 1.7e-45 187.2 211 53.6
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 1.7e-45 187.2 184 58.2
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 1.7e-45 187.2 184 58.2
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 1.7e-45 187.2 184 58.7
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 1.7e-45 187.2 260 47.3
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 2.9e-45 186.4 184 58.2
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 3.8e-45 186.0 184 58.7
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 8.5e-45 184.9 173 59.0
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 8.5e-45 184.9 267 49.4
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 8.5e-45 184.9 180 57.2
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 9.4e-44 181.4 155 63.2
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 2.1e-43 180.3 293 44.7
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 2.3e-42 176.8 177 60.5
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 2.0e-41 173.7 180 53.9
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 2.0e-41 173.7 180 53.9
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 1.7e-40 170.6 180 55.0
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 2.4e-39 166.8 202 54.5
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 2.6e-38 163.3 219 53.0
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.3e-37 161.0 142 61.3
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 7.2e-36 155.2 140 63.6
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.0e-34 151.4 201 54.2
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 4.8e-32 142.5 249 41.0
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 7.0e-31 138.7 162 54.9
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 9.1e-31 138.3 163 52.1
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 1.7e-29 134.0 122 62.3
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 5.0e-29 132.5 146 51.4
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 5.0e-29 132.5 117 65.0
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 3.2e-28 129.8 110 64.5
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 3.6e-27 126.3 170 46.5
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 2.2e-24 117.1 145 48.3
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 5.9e-22 109.0 102 61.8
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.0e-21 108.2 141 43.3
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 1.5e-20 104.4 172 40.1
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 3.2e-20 103.2 120 50.0
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 4.7e-19 99.4 105 55.2
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 4.7e-19 99.4 105 55.2
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 9.7e-17 91.7 113 47.8
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 3.1e-15 86.7 165 44.2
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 9.1e-15 85.1 187 35.8
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 4.2e-12 76.3 70 64.3
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 7.2e-12 75.5 74 62.2
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 9.4e-12 75.1 75 57.3
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 2.1e-11 73.9 132 38.6
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 1.4e-10 71.2 155 30.3
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 3.7e-08 63.2 77 50.6
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.2e-06 58.2 61 50.8


User provided reference genes

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