Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 6.8e-218 760.4 383 100.0
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 5.5e-103 378.6 497 50.1
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.5e-92 344.0 359 57.9
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 5.7e-92 342.0 324 61.1
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 4.4e-60 236.1 402 44.3
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 1.0e-56 224.9 414 42.3
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 3.9e-56 223.0 401 41.4
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 2.1e-54 217.2 419 40.1
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 8.1e-54 215.3 421 42.8
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 1.5e-52 211.1 377 42.7
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 9.9e-52 208.4 393 43.5
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 6.0e-49 199.1 389 40.6
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 5.1e-48 196.1 436 37.6
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 5.6e-47 192.6 454 37.7
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 1.4e-45 188.0 376 40.4
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 1.9e-42 177.6 435 37.0
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 1.0e-40 171.8 457 36.3
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 3.9e-40 169.9 400 37.5
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.1e-38 164.1 389 37.3
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 9.3e-34 148.7 393 36.9
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.2e-33 148.3 425 35.3
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 4.6e-33 146.4 404 37.1
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.5e-31 141.4 437 36.2
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 1.5e-31 141.4 414 35.0
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 5.7e-31 139.4 403 36.5
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 3.7e-30 136.7 428 35.5
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 4.8e-30 136.3 409 34.0
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.4e-29 134.8 408 34.3
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.8e-29 134.4 444 34.5
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 2.4e-29 134.0 423 34.8
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 3.1e-29 133.7 441 34.7
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.1e-29 133.7 411 33.3
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 6.9e-29 132.5 443 31.6
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 6.9e-29 132.5 445 34.4
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 9.0e-29 132.1 411 33.3
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 1.2e-28 131.7 377 37.9
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 2.6e-28 130.6 339 36.3
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.6e-28 130.6 441 34.5
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 2.6e-28 130.6 381 34.1
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 2.6e-28 130.6 433 33.5
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 4.5e-28 129.8 411 34.1
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 5.9e-28 129.4 326 36.5
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 7.6e-28 129.0 438 35.2
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 6.5e-27 125.9 460 32.6
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 4.2e-26 123.2 442 33.3
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 4.2e-26 123.2 395 32.9
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.2e-25 121.7 377 35.8
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.1e-25 120.9 390 33.6
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 6.1e-25 119.4 440 35.2
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 1.0e-24 118.6 457 32.8
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 3.9e-24 116.7 437 33.0
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 1.5e-23 114.8 293 34.5
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 4.3e-23 113.2 447 31.3
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 5.7e-23 112.8 454 31.5
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 2.8e-22 110.5 323 34.1
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.8e-22 109.8 412 30.3
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 6.3e-22 109.4 401 30.2
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 6.9e-21 105.9 340 34.4
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 6.9e-21 105.9 437 29.3
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 9.1e-21 105.5 409 29.6
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 1.5e-20 104.8 334 32.0
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.5e-20 104.8 418 31.1
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 2.0e-20 104.4 324 32.7
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 2.6e-20 104.0 460 29.3
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 3.4e-20 103.6 424 31.8
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 2.2e-19 100.9 454 29.7
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 5.0e-19 99.8 437 31.6
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 6.5e-19 99.4 421 31.1
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 2.5e-18 97.4 419 31.0
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 2.5e-18 97.4 410 32.7
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 7.2e-18 95.9 420 31.0
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.6e-17 94.7 417 29.0
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.6e-17 94.7 333 29.7
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 2.1e-17 94.4 385 31.4
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 2.7e-17 94.0 395 30.6
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 3.6e-17 93.6 402 32.6
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 3.6e-17 93.6 294 32.3
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.6e-17 93.2 417 30.7
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 6.1e-17 92.8 435 30.6
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 6.1e-17 92.8 385 31.7
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 7.9e-17 92.4 424 30.9
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.0e-16 92.0 349 33.5
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.4e-16 91.7 258 34.9
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.8e-16 91.3 397 31.2
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 2.3e-16 90.9 274 33.6
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 3.0e-16 90.5 411 29.2
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 3.9e-16 90.1 418 29.4
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 6.7e-16 89.4 390 31.5
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 1.5e-15 88.2 377 28.9
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.6e-15 87.4 426 30.0
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.3e-14 85.1 368 29.6
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 6.3e-14 82.8 319 32.6
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 8.2e-14 82.4 414 30.7
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.1e-13 80.5 284 32.4
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 3.1e-13 80.5 319 29.5
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 1.5e-12 78.2 398 29.6
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 4.5e-12 76.6 365 29.0
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 5.9e-12 76.3 322 30.1
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.0e-11 75.5 223 34.1
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.3e-11 75.1 294 32.0
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 2.9e-11 73.9 437 27.2
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 2.9e-11 73.9 297 31.0
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 2.9e-11 73.9 372 30.1
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 3.8e-11 73.6 357 28.3
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 5.0e-11 73.2 297 31.0
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 6.5e-11 72.8 363 28.7
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.1e-10 72.0 449 27.2
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 1.4e-10 71.6 255 30.2
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.4e-10 71.6 381 28.9
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 7.2e-10 69.3 321 29.9
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 4.7e-09 66.6 319 28.5
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 4.7e-09 66.6 371 29.4
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 6.1e-09 66.2 260 32.3
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 6.1e-09 66.2 417 24.2
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.4e-08 65.1 245 29.4
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 3.0e-08 63.9 417 27.8
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 2.0e-07 61.2 401 27.2
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 2.0e-07 61.2 228 32.0
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 2.2e-06 57.8 382 27.5
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 2.8e-06 57.4 226 29.6


User provided reference genes

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