Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 5.5e-167 591.3 352 100.0
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.3e-78 297.7 346 57.2
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 4.0e-69 266.2 367 51.0
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 1.9e-66 257.3 338 54.1
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 5.3e-61 239.2 361 45.2
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 9.0e-61 238.4 368 47.8
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 1.2e-60 238.0 369 45.8
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 7.4e-55 218.8 311 47.9
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.8e-53 214.2 322 43.8
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 1.8e-48 197.6 360 41.1
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 2.2e-43 180.6 259 44.8
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 7.4e-39 165.6 351 35.6
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 1.7e-38 164.5 352 35.2
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 6.3e-38 162.5 328 41.2
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.3e-35 154.8 342 35.7
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 1.3e-35 154.8 342 35.7
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 5.0e-35 152.9 280 39.3
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.9e-34 151.0 287 33.1
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 1.9e-34 151.0 338 34.9
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 2.5e-34 150.6 324 38.3
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 4.2e-34 149.8 373 35.4
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 6.1e-33 146.0 317 35.6
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 1.0e-32 145.2 408 37.3
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.8e-32 144.4 316 37.3
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 3.9e-32 143.3 199 44.7
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.5e-31 141.4 403 33.0
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 2.6e-31 140.6 273 39.2
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.6e-31 140.6 351 31.9
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.3e-31 140.2 267 37.5
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 3.3e-31 140.2 177 43.5
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.7e-30 137.9 338 35.5
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 3.7e-30 136.7 379 35.1
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 1.1e-29 135.2 296 32.1
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 9.1e-29 132.1 147 51.0
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.2e-28 131.7 298 33.9
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 2.6e-28 130.6 176 47.7
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 5.0e-27 126.3 323 34.7
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 1.1e-26 125.2 311 30.9
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.5e-26 124.8 322 34.5
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 2.5e-26 124.0 295 32.9
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 3.2e-26 123.6 333 34.8
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 4.2e-26 123.2 303 31.0
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 4.2e-26 123.2 276 34.1
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 5.5e-26 122.9 180 43.3
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 9.4e-26 122.1 276 34.4
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.2e-25 121.7 147 47.6
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 1.6e-25 121.3 185 42.2
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.6e-25 120.2 292 35.3
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 3.6e-25 120.2 271 32.8
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 3.6e-25 120.2 357 29.4
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 4.7e-25 119.8 160 45.0
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 6.1e-25 119.4 277 35.0
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 8.0e-25 119.0 334 37.1
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 1.4e-24 118.2 159 45.9
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 1.4e-24 118.2 330 31.5
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 3.0e-24 117.1 280 31.8
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 4.0e-24 116.7 161 42.2
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 5.2e-24 116.3 370 39.2
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 5.2e-24 116.3 191 37.7
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 5.2e-24 116.3 194 39.2
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 5.2e-24 116.3 315 29.5
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 8.8e-24 115.5 241 38.2
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 8.8e-24 115.5 328 30.8
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.2e-23 115.2 301 29.6
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 4.4e-23 113.2 338 32.5
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 7.5e-23 112.5 330 29.4
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 9.7e-23 112.1 339 32.2
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 1.7e-22 111.3 106 49.1
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 3.7e-22 110.2 147 41.5
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 3.7e-22 110.2 333 31.2
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.1e-21 108.6 190 36.8
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.4e-21 107.5 121 47.9
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 3.1e-21 107.1 351 32.8
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 3.1e-21 107.1 216 38.0
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 9.1e-21 105.5 211 35.1
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 1.2e-20 105.1 208 38.0
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 1.6e-20 104.8 191 39.8
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.6e-20 104.8 168 42.3
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 2.7e-20 104.0 190 36.8
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 2.7e-20 104.0 266 39.5
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.7e-20 104.0 165 37.0
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 3.5e-20 103.6 165 38.2
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 3.5e-20 103.6 193 35.2
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 4.5e-20 103.2 95 54.7
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 2.2e-19 100.9 154 39.0
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 2.9e-19 100.5 202 32.7
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 6.5e-19 99.4 173 37.0
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 8.5e-19 99.0 302 27.8
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.1e-18 98.6 202 38.6
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.9e-18 97.8 93 46.2
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 2.5e-18 97.4 144 41.0
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 3.2e-18 97.1 196 38.3
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 3.2e-18 97.1 89 51.7
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 7.2e-18 95.9 280 28.9
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 2.1e-17 94.4 279 30.1
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 3.6e-17 93.6 178 36.0
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.0e-16 92.0 273 28.9
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 1.4e-16 91.7 342 28.9
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 4.0e-16 90.1 279 28.7
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 4.0e-16 90.1 290 28.3
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 4.0e-16 90.1 273 29.7
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 5.2e-16 89.7 279 29.0
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 5.2e-16 89.7 356 27.2
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 6.8e-16 89.4 338 27.5
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 6.8e-16 89.4 127 40.2
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 2.0e-15 87.8 295 30.2
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 2.6e-15 87.4 316 31.0
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 4.4e-15 86.7 297 31.3
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 9.8e-15 85.5 273 27.5
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 1.3e-14 85.1 359 24.0
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.3e-14 85.1 80 46.2
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 2.2e-14 84.3 289 30.8
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 6.3e-14 82.8 65 56.9
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 6.3e-14 82.8 127 35.4
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 4.1e-13 80.1 174 35.6
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 9.1e-13 79.0 148 37.8
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 5.9e-12 76.3 93 37.6
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.0e-11 75.5 121 41.3
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.3e-11 74.3 72 52.8
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.5e-10 70.9 52 53.8
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.0e-08 65.5 64 48.4
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 1.0e-08 65.5 126 33.3
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 2.3e-08 64.3 88 38.6
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 5.2e-08 63.2 92 38.0
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 1.5e-07 61.6 45 68.9


User provided reference genes

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