Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 1.4e-265 919.1 461 100.0
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 2.3e-249 865.1 461 94.1
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 1.6e-237 825.9 465 89.9
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 2.4e-222 775.4 465 84.5
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 3.2e-222 775.0 465 83.7
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 6.0e-221 770.8 464 84.1
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 1.3e-220 769.6 465 83.9
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 1.2e-213 746.5 504 77.2
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 1.4e-209 733.0 467 80.5
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 1.3e-207 726.5 461 79.6
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 1.2e-205 719.9 460 80.2
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 1.5e-203 713.0 461 79.8
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 1.3e-199 699.9 413 87.7
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 5.0e-199 698.0 459 74.1
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 9.4e-198 693.7 460 73.3
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 2.7e-197 692.2 461 74.4
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 4.6e-197 691.4 476 72.9
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 1.8e-196 689.5 459 72.8
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 6.7e-196 687.6 461 72.5
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 2.0e-195 686.0 448 75.7
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 3.3e-195 685.3 458 73.1
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 2.8e-194 682.2 458 71.8
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.4e-193 679.1 466 70.6
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 4.1e-193 678.3 461 72.5
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 1.3e-191 673.3 472 71.2
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.7e-191 672.9 458 71.0
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 3.8e-191 671.8 463 71.7
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 5.5e-190 667.9 463 71.3
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 1.2e-189 666.8 477 70.2
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.2e-189 666.8 458 71.2
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 1.0e-188 663.7 459 71.7
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 3.9e-188 661.8 461 72.5
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 1.1e-187 660.2 458 70.3
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 2.6e-187 659.1 463 70.2
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 4.4e-187 658.3 461 71.4
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 5.7e-187 657.9 460 70.4
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 9.7e-187 657.1 456 71.1
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 2.2e-186 656.0 461 71.8
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 8.2e-186 654.1 460 70.9
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 1.4e-185 653.3 461 70.3
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 1.4e-185 653.3 460 71.5
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 3.1e-185 652.1 460 70.0
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 4.1e-185 651.7 460 70.4
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 5.3e-185 651.4 460 69.6
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 7.0e-185 651.0 460 70.0
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 9.1e-185 650.6 461 69.2
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 1.2e-184 650.2 455 69.5
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 7.7e-184 647.5 459 68.8
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 1.0e-183 647.1 461 67.9
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 2.2e-183 646.0 460 70.0
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 1.1e-182 643.7 460 69.6
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 1.9e-182 642.9 460 69.1
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 1.2e-181 640.2 460 69.1
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 2.7e-181 639.0 460 68.7
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 4.7e-181 638.3 460 68.7
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 8.0e-181 637.5 473 67.4
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 1.0e-180 637.1 460 68.5
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.0e-180 637.1 460 70.0
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 4.0e-180 635.2 463 68.3
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 1.1e-179 633.6 456 68.9
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 1.1e-179 633.6 456 68.9
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 1.5e-179 633.3 453 69.8
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 1.5e-179 633.3 460 68.7
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 3.3e-179 632.1 463 67.6
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 9.7e-179 630.6 463 67.4
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 1.3e-178 630.2 460 67.6
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 3.1e-177 625.5 460 67.2
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 5.3e-177 624.8 460 68.9
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 1.2e-176 623.6 467 67.2
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 2.7e-176 622.5 462 67.3
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 6.5e-175 617.8 470 67.9
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 8.5e-175 617.5 470 67.9
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 3.2e-174 615.5 475 65.5
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 1.4e-172 610.1 456 67.5
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 2.3e-172 609.4 463 66.1
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 1.2e-171 607.1 463 65.9
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.3e-170 603.6 461 65.5
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 1.4e-169 600.1 514 60.7
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 1.8e-169 599.7 460 65.9
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 9.1e-169 597.4 467 63.8
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 2.0e-168 596.3 427 69.1
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.0e-167 594.0 428 68.0
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.7e-167 593.2 462 66.5
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 5.0e-167 591.7 458 64.6
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 1.2e-165 587.0 403 71.5
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 2.7e-165 585.9 458 64.8
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 5.4e-161 571.6 401 69.3
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 2.5e-158 562.8 455 62.2
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 9.8e-155 550.8 427 65.1
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 5.4e-153 545.0 461 58.8
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 3.5e-152 542.3 461 60.7
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 6.2e-149 531.6 474 59.3
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 4.6e-144 515.4 461 59.2
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 2.3e-143 513.1 463 57.5
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 1.1e-140 504.2 465 58.3
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 2.4e-137 493.0 309 79.0
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 3.9e-135 485.7 477 55.8
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 6.0e-128 461.8 452 51.1
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 2.1e-125 453.4 376 62.5
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 4.2e-121 439.1 419 57.5
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 1.1e-118 431.0 282 73.8
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 2.1e-112 410.2 300 69.0
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 1.8e-103 380.6 305 62.6
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 9.0e-100 368.2 332 60.8
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 4.5e-99 365.9 410 49.0
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 4.8e-93 345.9 347 56.2
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 1.5e-91 340.9 457 41.4
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 3.2e-89 333.2 257 67.3
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 3.6e-88 329.7 248 71.4
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 8.7e-87 325.1 459 46.0
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 7.4e-86 322.0 384 48.4
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 1.3e-85 321.2 466 40.1
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 1.8e-84 317.4 467 40.5
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 2.5e-81 307.0 457 37.2
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 5.1e-79 299.3 228 60.5
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.2e-72 278.1 304 51.6
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 8.8e-63 245.4 234 54.7
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 6.3e-53 212.6 164 60.4
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 4.0e-47 193.4 168 57.1
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 4.4e-46 189.9 158 68.4
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.0e-34 152.1 120 61.7
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 3.0e-34 150.6 123 61.0
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 8.6e-34 149.1 121 62.8
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 8.6e-34 149.1 129 58.9
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 2.0e-30 137.9 95 74.7
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 2.0e-30 137.9 130 53.8
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 1.6e-19 101.7 86 57.0
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 1.8e-15 88.2 52 78.8
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 4.0e-15 87.0 322 26.7
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 1.2e-14 85.5 63 68.3
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 1.6e-11 75.1 104 41.3
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 2.6e-06 57.8 45 64.4


User provided reference genes

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