Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 9.1e-309 1062.8 546 100.0
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 9.8e-295 1016.1 542 96.5
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 4.9e-286 987.3 538 93.9
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 2.2e-278 961.8 545 90.5
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 3.1e-272 941.4 546 84.8
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 8.3e-270 933.3 546 83.2
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 3.2e-269 931.4 546 87.7
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.0e-267 926.4 546 86.4
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 5.0e-267 924.1 544 86.9
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 1.2e-265 919.5 546 86.8
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 1.1e-264 916.4 544 84.7
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 1.8e-264 915.6 546 82.4
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 5.2e-264 914.1 543 87.1
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 6.8e-264 913.7 545 84.8
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 8.9e-264 913.3 546 85.2
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 9.8e-263 909.8 543 81.0
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 9.8e-263 909.8 543 81.0
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 1.3e-262 909.4 545 83.7
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.1e-261 906.4 546 85.5
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 1.1e-261 906.4 543 81.2
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 1.4e-261 906.0 546 85.3
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 9.2e-261 903.3 546 81.1
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 2.7e-260 901.7 545 83.3
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 3.5e-260 901.4 545 80.9
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 6.0e-260 900.6 546 83.7
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 6.0e-260 900.6 546 83.7
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 1.0e-259 899.8 545 83.1
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.9e-259 897.9 542 84.3
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.1e-259 897.5 546 80.8
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 6.6e-259 897.1 543 83.1
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 6.6e-259 897.1 546 80.2
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 2.5e-258 895.2 546 83.0
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 9.5e-258 893.3 546 84.6
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 4.7e-257 891.0 535 82.1
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 2.3e-256 888.6 544 81.2
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 8.9e-256 886.7 545 79.8
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 2.9e-254 881.7 539 84.4
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 8.4e-254 880.2 546 78.0
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 1.4e-253 879.4 545 83.5
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 4.6e-252 874.4 544 79.2
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 6.0e-252 874.0 544 84.6
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 1.3e-251 872.8 539 81.8
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 1.7e-251 872.5 539 83.9
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 5.1e-251 870.9 533 83.5
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 6.6e-251 870.5 538 83.1
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 1.5e-250 869.4 584 75.7
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 1.9e-250 869.0 565 80.2
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 1.9e-250 869.0 533 83.5
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 5.6e-250 867.5 543 81.2
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 7.3e-250 867.1 543 82.7
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 9.6e-250 866.7 538 81.4
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 1.2e-249 866.3 543 80.3
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 1.6e-249 865.9 543 81.0
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 2.1e-249 865.5 543 79.7
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 2.1e-249 865.5 536 82.6
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 2.8e-249 865.1 543 77.9
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 2.8e-249 865.1 543 77.9
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.4e-248 862.8 539 81.4
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 2.4e-248 862.1 543 77.7
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 2.4e-248 862.1 543 77.7
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.4e-248 862.1 539 80.9
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.2e-247 859.8 539 81.3
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 7.6e-247 857.1 540 77.0
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 1.3e-246 856.3 543 78.3
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 1.3e-246 856.3 543 80.3
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 1.2e-244 849.7 542 80.3
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.6e-244 849.4 539 78.7
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 1.6e-244 849.4 539 79.4
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 2.7e-244 848.6 543 79.6
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 1.0e-243 846.7 577 74.4
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 2.5e-242 842.0 603 71.1
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 3.3e-242 841.6 603 71.0
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 4.8e-241 837.8 543 79.2
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 8.1e-241 837.0 636 68.4
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 2.6e-239 832.0 559 76.0
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 8.4e-238 827.0 540 76.7
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 1.1e-237 826.6 537 80.3
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 2.4e-237 825.5 600 73.8
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 5.6e-234 814.3 539 75.9
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 3.9e-227 791.6 550 77.6
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.9e-226 789.3 545 73.4
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 2.8e-225 785.4 534 74.3
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 4.6e-220 768.1 540 72.4
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 4.1e-216 755.0 453 85.7
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 7.6e-215 750.7 530 68.5
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 5.5e-213 744.6 556 69.6
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 6.1e-212 741.1 530 70.4
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 6.7e-211 737.6 519 73.6
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 8.7e-211 737.3 377 95.0
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 1.4e-205 719.9 543 68.9
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 1.0e-195 687.2 539 70.5
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 2.2e-193 679.5 579 61.8
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 1.6e-191 673.3 761 51.5
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 8.5e-190 667.5 376 85.9
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 2.5e-189 666.0 400 79.8
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 4.7e-188 661.8 540 65.9
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 1.8e-184 649.8 372 84.7
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 7.0e-184 647.9 535 64.5
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 1.4e-179 633.6 440 71.8
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 4.7e-172 608.6 546 55.5
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 4.0e-171 605.5 537 57.4
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 2.8e-156 556.2 533 53.3
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 2.0e-151 540.0 383 73.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 4.4e-138 495.7 490 54.3
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 1.1e-136 491.1 367 64.9
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.4e-136 490.7 338 67.8
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 9.2e-136 488.0 499 50.3
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 1.0e-134 484.6 268 88.8
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 4.9e-129 465.7 276 82.2
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 2.3e-110 403.7 378 60.6
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 8.2e-108 395.2 623 37.4
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 1.1e-107 394.8 330 65.2
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 7.1e-104 382.1 220 80.9
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 2.4e-99 367.1 272 68.0
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 4.5e-74 283.1 401 39.9
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.7e-71 273.9 154 89.6
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 1.2e-69 268.5 197 70.6
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 7.5e-69 265.8 158 78.5
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.5e-66 256.5 240 57.5
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 2.2e-65 254.2 553 30.4
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 6.1e-63 246.1 152 78.9
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 1.8e-62 244.6 170 72.9
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 5.2e-62 243.0 157 77.1
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 1.2e-61 241.9 595 28.9
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 2.0e-61 241.1 139 85.6
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.7e-55 219.9 152 75.7
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.2e-54 216.5 152 74.3
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.0e-50 204.5 244 48.8
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 3.5e-50 203.8 819 23.0
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 5.9e-50 203.0 163 58.9
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 4.0e-46 190.3 143 67.1
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 6.8e-46 189.5 109 84.4
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 2.7e-42 177.6 229 42.4
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 3.9e-41 173.7 136 62.5
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 5.2e-38 163.3 206 45.6
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 5.4e-35 153.3 121 67.8
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 6.0e-34 149.8 85 88.2
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.2e-10 72.4 74 54.1
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.5e-08 65.5 111 36.9
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.8e-06 58.5 57 50.9
SGA_v2.0_scaffold16G07518 Striga asiatica HOM05D005139 ORTHO05D006125 3.1e-06 57.8 123 32.5
ClCG07G010240 Citrullus lanatus HOM05D005139 ORTHO05D006125 5.3e-06 57.0 70 52.9
Carub.0002s1494 Capsella rubella HOM05D001168 ORTHO05D001044 6.9e-06 56.6 44 65.9


User provided reference genes

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